Variant report

Variant	rs6573475
Chromosome Location	chr14:63496963-63496964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1007062	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10129513	1.00[CEU][hapmap]
rs10130015	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10131734	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10132214	0.94[CEU][hapmap]
rs10132410	0.94[CEU][hapmap];0.87[CHB][hapmap]
rs10133358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs10139542	0.93[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs10141458	0.87[CEU][hapmap]
rs10141561	0.85[AMR][1000 genomes]
rs10142476	0.94[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10142809	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158468	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158469	0.87[CEU][hapmap]
rs11624884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12147350	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12587142	0.87[CEU][hapmap]
rs12587171	0.87[CEU][hapmap]
rs12589987	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12888947	0.85[ASN][1000 genomes]
rs1316916	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17100627	0.84[JPT][hapmap]
rs1950975	0.82[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap]
rs1950986	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs1950987	0.87[CEU][hapmap]
rs1950988	1.00[CEU][hapmap]
rs1950989	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap]
rs1950990	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1956673	0.87[CEU][hapmap]
rs1956679	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2180802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs28490569	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28591331	0.83[AMR][1000 genomes]
rs3906692	0.88[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs3906693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3910327	0.87[CEU][hapmap]
rs3910328	0.94[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3910329	1.00[CEU][hapmap]
rs5010674	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs5010675	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs5010676	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6573468	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6573476	0.87[CEU][hapmap]
rs6573477	0.86[CEU][hapmap]
rs67610164	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7140971	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7154634	0.87[CEU][hapmap]
rs7156008	0.84[CEU][hapmap]
rs7159483	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7159948	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs7160761	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs717059	0.87[CEU][hapmap]
rs72730205	0.80[AMR][1000 genomes]
rs8004263	0.87[CEU][hapmap]
rs8004870	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8005258	0.87[CEU][hapmap]
rs8006836	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8011042	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs8011714	0.86[AMR][1000 genomes]
rs8018212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021399	0.87[CEU][hapmap]
rs9323430	0.94[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9652353	0.80[AMR][1000 genomes]
rs9652354	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63496800-63497000	Enhancers	H9 Cell Line	embryonic stem cell
2	chr14:63496800-63497200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr14:63496800-63497200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:63496800-63497400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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