Variant report
| Variant | rs28591331 |
|---|---|
| Chromosome Location | chr14:63478983-63478984 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1007062 | 0.82[AMR][1000 genomes] |
| rs10141561 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11158468 | 0.82[AMR][1000 genomes] |
| rs12589987 | 0.83[AMR][1000 genomes] |
| rs17100627 | 0.93[ASN][1000 genomes] |
| rs1950990 | 0.83[AMR][1000 genomes] |
| rs1956679 | 0.83[AMR][1000 genomes] |
| rs28490569 | 0.82[AMR][1000 genomes] |
| rs3910328 | 0.82[AMR][1000 genomes] |
| rs3910329 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4257136 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4635259 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4902197 | 0.93[ASN][1000 genomes] |
| rs6573475 | 0.83[AMR][1000 genomes] |
| rs67610164 | 0.83[AMR][1000 genomes] |
| rs7140971 | 0.82[AMR][1000 genomes] |
| rs7141489 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7157827 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72730205 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs8004870 | 0.83[AMR][1000 genomes] |
| rs8006836 | 0.83[AMR][1000 genomes] |
| rs8011714 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8018212 | 0.83[AMR][1000 genomes] |
| rs9323430 | 0.82[AMR][1000 genomes] |
| rs9652353 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9652354 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527251 | chr14:63400786-64068806 | Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv520528 | chr14:63400786-64157117 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:63478200-63479400 | Enhancers | Hela-S3 | cervix |
| 2 | chr14:63478600-63481000 | Weak transcription | Placenta Amnion | Placenta Amnion |
