Variant report

Variant	rs3910328
Chromosome Location	chr14:63473480-63473481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1007062	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10129513	0.83[CEU][hapmap]
rs10130015	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs10131734	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10132214	0.88[CEU][hapmap]
rs10132410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10133358	0.83[CEU][hapmap];0.81[CHB][hapmap];0.84[YRI][hapmap]
rs10139542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10141561	0.83[AMR][1000 genomes]
rs10142476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10142809	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158468	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158469	0.83[CEU][hapmap]
rs11624884	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[YRI][hapmap]
rs12147350	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12589987	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12888947	0.96[ASN][1000 genomes]
rs1316916	0.89[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs17100627	0.85[JPT][hapmap]
rs1950975	0.89[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs1950986	0.88[ASW][hapmap];0.94[CEU][hapmap];0.83[CHB][hapmap];0.82[LWK][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs1950987	0.83[CEU][hapmap]
rs1950988	0.83[CEU][hapmap];0.86[MEX][hapmap]
rs1950989	0.83[CEU][hapmap];0.86[MEX][hapmap]
rs1950990	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1956673	0.83[CEU][hapmap]
rs1956679	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2180802	0.85[CHB][hapmap];0.95[YRI][hapmap]
rs28490569	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28591331	0.82[AMR][1000 genomes]
rs3906692	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs3906693	0.81[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap]
rs3910327	0.83[CEU][hapmap]
rs3910329	0.83[CEU][hapmap];0.86[MEX][hapmap]
rs5010674	0.83[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs5010675	0.80[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs5010676	0.82[CEU][hapmap];0.83[CHB][hapmap];0.81[YRI][hapmap]
rs6573468	0.94[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs6573475	0.94[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573476	0.83[CEU][hapmap]
rs67610164	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7140971	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7154634	0.83[CEU][hapmap]
rs7159483	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap]
rs7159948	0.83[CEU][hapmap]
rs7160761	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs717059	0.83[CEU][hapmap]
rs8004870	0.94[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006836	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8011042	0.95[CHB][hapmap];0.89[YRI][hapmap]
rs8011714	0.85[AMR][1000 genomes]
rs8018212	0.94[CEU][hapmap];0.86[CHB][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9323430	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63466400-63476800	Weak transcription	Hela-S3	cervix
2	chr14:63473400-63473600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon

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