Variant report

Variant	rs8011042
Chromosome Location	chr14:63487214-63487215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1007062	0.81[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10131734	0.92[ASN][1000 genomes]
rs10132410	0.95[CHB][hapmap]
rs10133358	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs10139542	0.81[CEU][hapmap];0.95[CHB][hapmap];0.93[YRI][hapmap]
rs10142476	0.95[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs10142809	0.92[ASN][1000 genomes]
rs11158468	0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11624884	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs12147350	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12589987	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12888947	0.86[ASN][1000 genomes]
rs1316916	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17100627	0.83[JPT][hapmap]
rs1950975	1.00[CHB][hapmap]
rs1950986	0.81[CHB][hapmap];0.81[YRI][hapmap]
rs1950989	0.89[JPT][hapmap]
rs1950990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1956679	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2180802	0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap]
rs28490569	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3906692	1.00[CHB][hapmap]
rs3906693	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs3910328	0.95[CHB][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5010674	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs5010675	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs5010676	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6573468	0.95[CHB][hapmap]
rs6573475	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs67610164	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7140971	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7159483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7159948	0.84[JPT][hapmap]
rs7160761	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs8004870	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8006836	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8018212	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9323430	0.95[CHB][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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