Variant report

Variant	rs12888947
Chromosome Location	chr14:63484259-63484260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1007062	0.91[ASN][1000 genomes]
rs10131734	0.94[ASN][1000 genomes]
rs10142476	0.94[ASN][1000 genomes]
rs10142809	0.94[ASN][1000 genomes]
rs11158468	0.91[ASN][1000 genomes]
rs12147350	0.94[ASN][1000 genomes]
rs12589987	0.90[ASN][1000 genomes]
rs1950990	0.86[ASN][1000 genomes]
rs1956679	0.88[ASN][1000 genomes]
rs28490569	0.94[ASN][1000 genomes]
rs3910328	0.96[ASN][1000 genomes]
rs6573475	0.85[ASN][1000 genomes]
rs67610164	0.88[ASN][1000 genomes]
rs7140971	0.94[ASN][1000 genomes]
rs8004870	0.90[ASN][1000 genomes]
rs8006836	0.88[ASN][1000 genomes]
rs8018212	0.85[ASN][1000 genomes]
rs9323430	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63479400-63485200	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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