Variant report

Variant	rs10131728
Chromosome Location	chr14:81635323-81635324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81635245..81640402-chr14:81683793..81689293,8	MCF-7	breast:
2	chr14:81634129..81641173-chr14:81683190..81688873,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12878339	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12878477	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12878503	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879576	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880377	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880414	1.00[ASN][1000 genomes]
rs12880512	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880551	1.00[CHB][hapmap]
rs12883359	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883532	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889291	1.00[CHB][hapmap]
rs12891828	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12892815	1.00[CHB][hapmap]
rs12893275	1.00[CEU][hapmap]
rs12893436	1.00[ASN][1000 genomes]
rs12894001	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894318	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894596	1.00[CHB][hapmap]
rs12895215	1.00[CHB][hapmap]
rs12895990	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17630746	1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371566	0.82[EUR][1000 genomes]
rs35446669	1.00[ASN][1000 genomes]
rs4592586	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
IgG glycosylation	23382691	GWAS catalog

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81619600-81636000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81629200-81635600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:81629200-81636200	Weak transcription	Aorta	Aorta
4	chr14:81630000-81636000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:81630800-81635600	Weak transcription	Pancreas	Pancrea
6	chr14:81631000-81635600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr14:81631000-81635600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:81631000-81635600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:81631000-81635600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr14:81631000-81635800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:81631000-81635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:81631000-81635800	Weak transcription	Fetal Heart	heart
13	chr14:81631000-81636000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:81631000-81636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:81631000-81636000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:81631000-81636000	Weak transcription	HMEC	breast
17	chr14:81631200-81636000	Weak transcription	Left Ventricle	heart
18	chr14:81631800-81635600	Weak transcription	Liver	Liver
19	chr14:81631800-81636200	Weak transcription	K562	blood
20	chr14:81632400-81635600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:81632600-81635600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:81633000-81635600	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:81633000-81635600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:81633000-81635600	Weak transcription	Brain Substantia Nigra	brain
25	chr14:81633200-81635600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:81633400-81636000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:81633400-81636000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:81634600-81635800	Enhancers	HepG2	liver
29	chr14:81634800-81635600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:81634800-81635800	Enhancers	Primary T cells from cord blood	blood
31	chr14:81634800-81635800	Enhancers	Dnd41	blood
32	chr14:81635000-81635600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:81635000-81635600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr14:81635000-81635800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr14:81635000-81636000	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr14:81635000-81636000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr14:81635000-81636000	Enhancers	Fetal Thymus	thymus
38	chr14:81635200-81636000	Enhancers	Primary hematopoietic stem cells	blood
39	chr14:81635200-81636000	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links