Variant report
| Variant | rs12893436 |
|---|---|
| Chromosome Location | chr14:81707236-81707237 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:81683519..81693455-chr14:81706363..81723125,33 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165417 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10131728 | 1.00[ASN][1000 genomes] |
| rs12878339 | 1.00[ASN][1000 genomes] |
| rs12878477 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12878503 | 1.00[ASN][1000 genomes] |
| rs12879576 | 1.00[ASN][1000 genomes] |
| rs12880377 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12880414 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12880512 | 1.00[ASN][1000 genomes] |
| rs12883359 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12883532 | 1.00[ASN][1000 genomes] |
| rs12884270 | 0.84[AMR][1000 genomes] |
| rs12891586 | 0.85[AMR][1000 genomes] |
| rs12891828 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12892815 | 0.85[AMR][1000 genomes] |
| rs12892839 | 0.85[AMR][1000 genomes] |
| rs12894001 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12894318 | 1.00[ASN][1000 genomes] |
| rs12895990 | 1.00[ASN][1000 genomes] |
| rs17630746 | 1.00[ASN][1000 genomes] |
| rs35446669 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4592586 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832841 | chr14:81588322-81743921 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 86 gene(s) | inside rSNPs | diseases |
| 2 | nsv902118 | chr14:81679650-81715989 | Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | n/a |
| 3 | nsv974355 | chr14:81705202-81712801 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
