Variant report

Variant	rs12891586
Chromosome Location	chr14:81712844-81712845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12878477	0.85[AMR][1000 genomes]
rs12880377	0.92[AMR][1000 genomes]
rs12880414	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12880551	0.94[EUR][1000 genomes]
rs12883359	0.92[AMR][1000 genomes]
rs12884270	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12888290	0.97[EUR][1000 genomes]
rs12891828	0.85[AMR][1000 genomes]
rs12892815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12892839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12893436	0.85[AMR][1000 genomes]
rs12894001	0.92[AMR][1000 genomes]
rs12895215	0.96[EUR][1000 genomes]
rs12897788	0.89[EUR][1000 genomes]
rs35446669	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4592586	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81711600-81722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:81711800-81714600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:81712000-81713000	Enhancers	Dnd41	blood
4	chr14:81712000-81714200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:81712000-81714400	Enhancers	NHDF-Ad	bronchial
6	chr14:81712200-81713600	Enhancers	Ovary	ovary
7	chr14:81712200-81714400	Enhancers	Fetal Muscle Trunk	muscle
8	chr14:81712400-81714200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:81712600-81714200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:81712600-81714200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:81712600-81714600	Flanking Active TSS	HSMM	muscle
12	chr14:81712800-81713200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:81712800-81713200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:81712800-81714200	Enhancers	HMEC	breast
15	chr14:81712800-81714600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:81712800-81714600	Enhancers	Fetal Muscle Leg	muscle
17	chr14:81712800-81714800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:81712800-81714800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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