Variant report

Variant	rs1013278
Chromosome Location	chr7:117603820-117603821
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117600053..117602878-chr7:117603164..117607183,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10226992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264984	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10270826	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10280709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282032	0.97[EUR][1000 genomes]
rs12111806	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12113919	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438572	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17568511	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2188836	0.88[EUR][1000 genomes]
rs2402273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28438696	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28714277	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784849	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793280	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801876	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916784	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970185	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117601200-117604200	Enhancers	Adipose Nuclei	Adipose
2	chr7:117601200-117605200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:117601200-117605200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:117601200-117605400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:117601200-117605400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:117601200-117605400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:117601400-117605000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:117601400-117605000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:117601800-117605400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:117602000-117604400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:117602200-117604000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:117602200-117605200	Enhancers	Fetal Lung	lung
13	chr7:117602600-117604000	Enhancers	Fetal Stomach	stomach
14	chr7:117602800-117604000	Enhancers	Brain Substantia Nigra	brain
15	chr7:117602800-117604200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:117602800-117605400	Enhancers	Fetal Kidney	kidney
17	chr7:117603000-117604000	Enhancers	Brain Germinal Matrix	brain
18	chr7:117603000-117605000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:117603200-117604000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr7:117603400-117604000	Enhancers	Brain Hippocampus Middle	brain
21	chr7:117603400-117604000	Enhancers	Colon Smooth Muscle	Colon
22	chr7:117603400-117604400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:117603400-117604800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:117603600-117604200	Enhancers	Duodenum Smooth Muscle	Duodenum

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