Variant report

Variant	rs17568511
Chromosome Location	chr7:117627004-117627005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1013278	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10226992	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10230941	0.87[ASN][1000 genomes]
rs10231973	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs10237233	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10240110	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs10249457	0.85[ASN][1000 genomes]
rs10255829	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs10264984	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270826	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280709	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10282032	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111806	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12113919	0.97[EUR][1000 genomes]
rs13438572	0.96[EUR][1000 genomes]
rs13438629	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs17569137	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2188836	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2214230	0.87[ASN][1000 genomes]
rs2402273	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs2402295	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28438696	0.97[EUR][1000 genomes]
rs28714277	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61702433	0.98[ASN][1000 genomes]
rs739619	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs757038	0.85[ASN][1000 genomes]
rs7784849	1.00[CEU][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes]
rs7793280	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7801876	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs8180706	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs8180812	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs916784	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs970185	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989996	0.86[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117622800-117627200	Weak transcription	Esophagus	oesophagus
2	chr7:117623600-117632800	Weak transcription	Fetal Kidney	kidney

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