Variant report

Variant	rs10230941
Chromosome Location	chr7:117636111-117636112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction
ENSG00000004866	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000077063	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10231973	0.98[ASN][1000 genomes]
rs10240110	0.98[ASN][1000 genomes]
rs10249457	0.98[ASN][1000 genomes]
rs10255829	0.98[ASN][1000 genomes]
rs10264984	0.87[ASN][1000 genomes]
rs10270826	0.87[ASN][1000 genomes]
rs10282032	0.87[ASN][1000 genomes]
rs13438629	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17568511	0.87[ASN][1000 genomes]
rs17569137	0.98[ASN][1000 genomes]
rs2188836	0.98[ASN][1000 genomes]
rs2214230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61702433	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs739619	0.98[ASN][1000 genomes]
rs757038	0.98[ASN][1000 genomes]
rs8180706	0.98[ASN][1000 genomes]
rs8180812	0.98[ASN][1000 genomes]
rs970185	0.87[ASN][1000 genomes]
rs989996	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117632000-117637800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:117633400-117645400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:117634000-117638200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:117635600-117636600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:117635600-117640600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:117636000-117638000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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