Variant report

Variant	rs10270826
Chromosome Location	chr7:117623182-117623183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1013278	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10226992	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10230941	0.87[ASN][1000 genomes]
rs10231973	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs10237233	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10240110	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs10249457	0.85[ASN][1000 genomes]
rs10255829	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs10264984	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280709	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10282032	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111806	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12113919	0.96[EUR][1000 genomes]
rs13438572	0.97[EUR][1000 genomes]
rs13438629	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs17568511	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17569137	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2188836	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2214230	0.87[ASN][1000 genomes]
rs2402273	1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2402295	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28438696	0.96[EUR][1000 genomes]
rs28714277	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61702433	0.98[ASN][1000 genomes]
rs739619	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs757038	0.85[ASN][1000 genomes]
rs7784849	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs7793280	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7801876	1.00[CEU][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs8180706	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs8180812	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs916784	1.00[CEU][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs970185	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989996	0.86[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117621800-117623600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:117621800-117623600	Enhancers	Fetal Kidney	kidney
3	chr7:117622200-117623400	Enhancers	Fetal Lung	lung
4	chr7:117622400-117623400	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr7:117622600-117623400	Enhancers	Fetal Intestine Large	intestine
6	chr7:117622600-117623600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr7:117622800-117627200	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links