Variant report

Variant	rs10134149
Chromosome Location	chr14:32066499-32066500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10132643	0.90[EUR][1000 genomes]
rs10133316	0.90[EUR][1000 genomes]
rs10134289	0.90[EUR][1000 genomes]
rs10134536	0.90[EUR][1000 genomes]
rs10136964	0.90[EUR][1000 genomes]
rs10137049	0.90[EUR][1000 genomes]
rs10139371	0.90[EUR][1000 genomes]
rs10139622	0.90[EUR][1000 genomes]
rs10142569	0.90[EUR][1000 genomes]
rs10142910	0.90[EUR][1000 genomes]
rs10145125	0.90[EUR][1000 genomes]
rs10146169	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10146780	0.90[EUR][1000 genomes]
rs10149263	0.90[EUR][1000 genomes]
rs10149800	0.90[EUR][1000 genomes]
rs10150573	0.90[EUR][1000 genomes]
rs10220432	0.90[EUR][1000 genomes]
rs12101002	0.90[EUR][1000 genomes]
rs28435781	0.82[EUR][1000 genomes]
rs28536186	0.90[EUR][1000 genomes]
rs28548899	0.90[EUR][1000 genomes]
rs28579645	0.90[EUR][1000 genomes]
rs28595838	0.90[EUR][1000 genomes]
rs28631166	0.90[EUR][1000 genomes]
rs28782552	0.90[EUR][1000 genomes]
rs28788619	0.90[EUR][1000 genomes]
rs28873511	0.90[EUR][1000 genomes]
rs28890036	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73271206	0.90[EUR][1000 genomes]
rs8009987	0.90[EUR][1000 genomes]
rs9805996	0.90[EUR][1000 genomes]
rs9944165	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32031400-32069400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:32031400-32069600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr14:32031600-32069200	Weak transcription	Fetal Intestine Small	intestine
4	chr14:32031800-32068200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:32031800-32069400	Weak transcription	A549	lung
6	chr14:32037400-32069400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:32037400-32071200	Weak transcription	HSMM	muscle
8	chr14:32037600-32069400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:32042800-32068800	Weak transcription	Primary B cells from cord blood	blood
10	chr14:32042800-32075600	Weak transcription	Primary T cells from cord blood	blood
11	chr14:32046200-32110600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:32046400-32073400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:32046600-32069400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:32047200-32069400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:32048400-32069400	Weak transcription	Left Ventricle	heart
16	chr14:32050000-32075600	Weak transcription	Brain Germinal Matrix	brain
17	chr14:32052800-32089800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:32059000-32071600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr14:32059800-32069400	Weak transcription	Adipose Nuclei	Adipose
20	chr14:32060400-32069400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:32061600-32071200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:32062000-32071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:32062200-32069400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:32063600-32069400	Weak transcription	Ovary	ovary
25	chr14:32063600-32069400	Weak transcription	Pancreas	Pancrea
26	chr14:32063600-32069400	Weak transcription	Spleen	Spleen
27	chr14:32063600-32075000	Weak transcription	Fetal Intestine Large	intestine
28	chr14:32063800-32069400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:32063800-32069400	Weak transcription	HepG2	liver
30	chr14:32065000-32069400	Weak transcription	Liver	Liver
31	chr14:32065800-32069400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:32065800-32069400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:32065800-32071200	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:32065800-32089800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:32065800-32089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr14:32066000-32069400	Weak transcription	Fetal Brain Female	brain
37	chr14:32066200-32069400	Weak transcription	Fetal Stomach	stomach
38	chr14:32066200-32073000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr14:32066400-32069400	Weak transcription	Fetal Kidney	kidney
40	chr14:32066400-32077000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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