Variant report

Variant	rs12101002
Chromosome Location	chr14:32145189-32145190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10132643	1.00[EUR][1000 genomes]
rs10132874	0.81[EUR][1000 genomes]
rs10133316	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134149	0.90[EUR][1000 genomes]
rs10134289	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134536	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10136964	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10137049	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139371	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139622	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139871	1.00[YRI][hapmap]
rs10142569	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10142910	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143774	1.00[CEU][hapmap]
rs10145125	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146169	0.81[EUR][1000 genomes]
rs10146780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149263	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10149800	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150573	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10220330	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10220432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12885598	0.88[YRI][hapmap]
rs1540425	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17390625	0.80[YRI][hapmap]
rs28435781	0.91[EUR][1000 genomes]
rs28536186	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28548899	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28579645	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28595838	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28631166	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28782552	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28788619	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28838063	0.81[EUR][1000 genomes]
rs28849433	0.81[EUR][1000 genomes]
rs28873511	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28890036	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4981905	1.00[YRI][hapmap]
rs73271206	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8009987	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9635155	1.00[YRI][hapmap]
rs9805996	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9944165	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	esv3414517	chr14:32144250-32168719	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32117000-32148200	Weak transcription	Pancreas	Pancrea
2	chr14:32135200-32147000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:32135400-32147000	Weak transcription	HepG2	liver
4	chr14:32135800-32170800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:32136200-32147000	Weak transcription	Fetal Stomach	stomach
6	chr14:32137000-32146800	Weak transcription	Spleen	Spleen
7	chr14:32137200-32147000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:32137200-32147400	Weak transcription	Left Ventricle	heart
9	chr14:32137200-32149400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:32137600-32146800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:32138200-32147000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:32138200-32147200	Weak transcription	Lung	lung
13	chr14:32138600-32146800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:32139000-32147800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:32140600-32153200	Weak transcription	Primary T cells from cord blood	blood
16	chr14:32141400-32175800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:32141800-32151200	Weak transcription	Gastric	stomach
18	chr14:32142200-32146800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:32142200-32166200	Weak transcription	Primary B cells from cord blood	blood
20	chr14:32142600-32147600	Weak transcription	Ovary	ovary
21	chr14:32143800-32147400	Weak transcription	Thymus	Thymus
22	chr14:32144000-32147200	Weak transcription	Fetal Intestine Small	intestine
23	chr14:32144400-32147200	Weak transcription	HSMM	muscle
24	chr14:32144600-32150800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr14:32145000-32147000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:32145000-32150200	Weak transcription	Adipose Nuclei	Adipose

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