Variant report

Variant	rs10150573
Chromosome Location	chr14:32208924-32208925
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10132643	1.00[EUR][1000 genomes]
rs10132874	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10133316	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10134149	0.90[EUR][1000 genomes]
rs10134289	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10134536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137049	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10139371	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10139622	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10142569	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142910	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10145125	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10146169	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10146780	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10149263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149800	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10220330	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10220432	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12101002	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1540425	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28435781	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28536186	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28548899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28579645	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28595838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28631166	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28754845	0.84[AFR][1000 genomes]
rs28782552	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28788619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28838063	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28849433	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28873511	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28890036	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73271206	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs8009987	1.00[EUR][1000 genomes]
rs9805996	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9944165	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv456199	chr14:32183849-32241873	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv564183	chr14:32183849-32241873	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32173400-32218000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32199200-32210200	Weak transcription	HepG2	liver
3	chr14:32201200-32209000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:32201400-32210200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:32208800-32209000	ZNF genes & repeats	Fetal Lung	lung
6	chr14:32208800-32210600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links