Variant report

Variant	rs1540425
Chromosome Location	chr14:32296018-32296019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32295269..32297310-chr14:32302685..32304466,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10132643	0.81[EUR][1000 genomes]
rs10132874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134289	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10134536	1.00[CEU][hapmap];0.80[MKK][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10136964	1.00[CEU][hapmap];0.82[MKK][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10137049	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10139371	1.00[CEU][hapmap]
rs10139622	1.00[CEU][hapmap]
rs10142569	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10142910	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10143774	1.00[CEU][hapmap]
rs10145125	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10146780	0.81[EUR][1000 genomes]
rs10149263	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10149800	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10150573	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10220330	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220432	0.81[EUR][1000 genomes]
rs12101002	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs28536186	0.81[EUR][1000 genomes]
rs28548899	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28579645	0.81[EUR][1000 genomes]
rs28595838	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28631166	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28782552	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28788619	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28838063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28849433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28873511	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8009987	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9805996	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9944165	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:32281800-32330200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:32282600-32298000	Weak transcription	Fetal Stomach	stomach
4	chr14:32288400-32298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:32289200-32298200	Weak transcription	Placenta	Placenta
6	chr14:32291000-32299600	Weak transcription	Brain Anterior Caudate	brain
7	chr14:32291000-32310400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:32291200-32298600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:32292800-32296600	Weak transcription	Primary T cells from cord blood	blood
10	chr14:32293200-32303600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr14:32294200-32328800	Weak transcription	Ovary	ovary
12	chr14:32294400-32296600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:32294400-32299600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:32294600-32297000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr14:32294600-32304200	Weak transcription	HSMM	muscle
16	chr14:32294800-32298000	Weak transcription	Fetal Lung	lung
17	chr14:32294800-32328000	Weak transcription	Left Ventricle	heart
18	chr14:32295000-32297200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:32295000-32332800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:32295400-32297400	Strong transcription	Primary B cells from cord blood	blood
21	chr14:32295400-32297800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:32295800-32296600	Strong transcription	HepG2	liver
23	chr14:32295800-32297000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:32295800-32298200	Weak transcription	Fetal Muscle Leg	muscle

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