Variant report

Variant	rs10134821
Chromosome Location	chr14:31568292-31568293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10130804	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10136065	0.88[EUR][1000 genomes]
rs10136918	0.89[EUR][1000 genomes]
rs10142413	0.84[EUR][1000 genomes]
rs10146042	0.95[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs10146272	0.88[EUR][1000 genomes]
rs10147747	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12588474	1.00[CHB][hapmap]
rs12880208	0.88[EUR][1000 genomes]
rs12888959	0.95[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs28377925	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28806860	0.92[EUR][1000 genomes]
rs34807591	0.88[EUR][1000 genomes]
rs34975239	0.96[EUR][1000 genomes]
rs61978760	0.92[EUR][1000 genomes]
rs6571391	0.82[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6571392	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7144107	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7147179	0.88[EUR][1000 genomes]
rs7154556	0.84[EUR][1000 genomes]
rs7159848	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7161315	0.81[EUR][1000 genomes]
rs8004286	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8005747	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8022272	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035937	chr14:31447842-31579660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv542018	chr14:31447842-31579660	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1048736	chr14:31447842-31624912	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1049063	chr14:31473521-31622741	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832763	chr14:31501597-31680021	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv1043033	chr14:31538984-31686696	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31497000-31568600	Weak transcription	Fetal Kidney	kidney
2	chr14:31534600-31572000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:31534800-31569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:31537400-31569200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:31537800-31569800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:31547000-31569800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:31548600-31569600	Weak transcription	Brain Germinal Matrix	brain
8	chr14:31548800-31571800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:31550400-31569800	Weak transcription	Aorta	Aorta
10	chr14:31550600-31568600	Weak transcription	K562	blood
11	chr14:31558600-31569400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:31560600-31569000	Weak transcription	Fetal Heart	heart
13	chr14:31560600-31569400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:31560600-31569600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:31560800-31569600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:31560800-31569800	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:31561400-31569000	Weak transcription	Stomach Mucosa	stomach
18	chr14:31561400-31571800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr14:31561600-31569600	Weak transcription	Right Ventricle	heart
20	chr14:31561800-31569800	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:31561800-31569800	Weak transcription	Small Intestine	intestine
22	chr14:31561800-31572400	Weak transcription	Psoas Muscle	Psoas
23	chr14:31563600-31570000	Weak transcription	Pancreas	Pancrea
24	chr14:31563800-31650000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:31564800-31648600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:31565000-31568800	Strong transcription	Fetal Intestine Small	intestine
27	chr14:31565200-31569000	Strong transcription	Fetal Stomach	stomach
28	chr14:31565400-31599000	Strong transcription	Adipose Nuclei	Adipose
29	chr14:31565600-31571800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr14:31565600-31576200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:31565600-31593200	Strong transcription	Primary B cells from cord blood	blood
32	chr14:31565600-31593200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr14:31565600-31598000	Strong transcription	Liver	Liver
34	chr14:31565600-31648000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:31565800-31576000	Strong transcription	Osteobl	bone
36	chr14:31565800-31578800	Strong transcription	HUVEC	blood vessel
37	chr14:31565800-31596800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:31566000-31572000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:31566000-31572600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:31566000-31574800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:31566000-31575800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:31566000-31586600	Strong transcription	Fetal Muscle Leg	muscle
43	chr14:31566000-31591400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr14:31566000-31592800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:31566000-31599200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr14:31566000-31627400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:31566200-31570600	Strong transcription	Lung	lung
48	chr14:31566200-31572000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:31566200-31576200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:31566200-31578800	Strong transcription	Fetal Thymus	thymus

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