Variant report

Variant	rs10146272
Chromosome Location	chr14:31656890-31656891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130804	1.00[JPT][hapmap];0.81[TSI][hapmap]
rs10134821	0.88[EUR][1000 genomes]
rs10136065	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136918	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142413	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146042	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147747	0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880208	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12888959	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28377925	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28806860	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34666986	1.00[ASN][1000 genomes]
rs34807591	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34975239	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61976859	1.00[ASN][1000 genomes]
rs61978760	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978769	0.92[ASN][1000 genomes]
rs61995486	1.00[ASN][1000 genomes]
rs6571391	0.97[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap]
rs6571392	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144107	0.86[EUR][1000 genomes]
rs7147179	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154556	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159848	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161315	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8004286	0.80[EUR][1000 genomes]
rs8005747	0.83[EUR][1000 genomes]
rs8022272	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv832763	chr14:31501597-31680021	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1043033	chr14:31538984-31686696	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10146272	C14orf23	cis	parietal	SCAN
rs10146272	HECTD1	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31629800-31664800	Weak transcription	Right Atrium	heart
2	chr14:31632800-31658000	Weak transcription	Small Intestine	intestine
3	chr14:31635800-31663400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:31637200-31658000	Weak transcription	Right Ventricle	heart
5	chr14:31637200-31675000	Weak transcription	Gastric	stomach
6	chr14:31637800-31662200	Strong transcription	Fetal Intestine Small	intestine
7	chr14:31638800-31672000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:31639600-31663400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:31640800-31674000	Weak transcription	Fetal Brain Male	brain
10	chr14:31643000-31664800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:31643000-31664800	Weak transcription	Psoas Muscle	Psoas
12	chr14:31643200-31662200	Weak transcription	Fetal Kidney	kidney
13	chr14:31643200-31663800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:31643200-31664000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:31643200-31664000	Weak transcription	Fetal Heart	heart
16	chr14:31643200-31675000	Weak transcription	Esophagus	oesophagus
17	chr14:31643400-31675000	Weak transcription	Spleen	Spleen
18	chr14:31643600-31659800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:31644400-31663200	Weak transcription	NH-A	brain
20	chr14:31644600-31658000	Weak transcription	Hela-S3	cervix
21	chr14:31644600-31659200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:31644800-31664200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:31644800-31664400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr14:31644800-31675000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:31644800-31675000	Weak transcription	Pancreas	Pancrea
26	chr14:31645000-31659000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:31645000-31659800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:31645000-31663400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:31645600-31659200	Weak transcription	HSMM	muscle
30	chr14:31645600-31659800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:31645600-31675000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:31645800-31659000	Weak transcription	NHLF	lung
33	chr14:31646600-31657600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr14:31646600-31674400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:31647400-31659000	Weak transcription	NHEK	skin
36	chr14:31647400-31659200	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:31647400-31664000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:31647400-31664200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr14:31647400-31664400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr14:31647400-31667200	Weak transcription	Brain Substantia Nigra	brain
41	chr14:31647600-31659000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:31647600-31659200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr14:31647600-31659400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:31647600-31665200	Weak transcription	K562	blood
45	chr14:31647800-31658000	Weak transcription	Ovary	ovary
46	chr14:31647800-31658800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:31647800-31659200	Weak transcription	NHDF-Ad	bronchial
48	chr14:31647800-31662000	Weak transcription	HUVEC	blood vessel
49	chr14:31648000-31658000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr14:31648000-31659000	Weak transcription	Adipose Nuclei	Adipose

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