Variant report
| Variant | rs10135475 |
|---|---|
| Chromosome Location | chr14:78820214-78820215 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10135111 | 1.00[AMR][1000 genomes] |
| rs11159360 | 1.00[AMR][1000 genomes] |
| rs1156946 | 1.00[AMR][1000 genomes] |
| rs1990530 | 1.00[AMR][1000 genomes] |
| rs2052202 | 1.00[AMR][1000 genomes] |
| rs2052203 | 1.00[AMR][1000 genomes] |
| rs2110424 | 1.00[AMR][1000 genomes] |
| rs2192413 | 1.00[AMR][1000 genomes] |
| rs2192414 | 1.00[AMR][1000 genomes] |
| rs2192415 | 1.00[AMR][1000 genomes] |
| rs2192421 | 1.00[AMR][1000 genomes] |
| rs2215830 | 1.00[AMR][1000 genomes] |
| rs2215831 | 1.00[AMR][1000 genomes] |
| rs2215832 | 1.00[AMR][1000 genomes] |
| rs2215833 | 1.00[AMR][1000 genomes] |
| rs2366099 | 1.00[AMR][1000 genomes] |
| rs2366156 | 1.00[AMR][1000 genomes] |
| rs2886581 | 1.00[AMR][1000 genomes] |
| rs4899709 | 1.00[AMR][1000 genomes] |
| rs4899710 | 1.00[AMR][1000 genomes] |
| rs4903756 | 1.00[AMR][1000 genomes] |
| rs4903765 | 1.00[AMR][1000 genomes] |
| rs6574444 | 1.00[AMR][1000 genomes] |
| rs6574449 | 1.00[AMR][1000 genomes] |
| rs6574450 | 1.00[AMR][1000 genomes] |
| rs7150246 | 1.00[YRI][hapmap] |
| rs7157498 | 1.00[AMR][1000 genomes] |
| rs7158579 | 1.00[AMR][1000 genomes] |
| rs7159492 | 1.00[AMR][1000 genomes] |
| rs8003367 | 1.00[AMR][1000 genomes] |
| rs8003391 | 1.00[AMR][1000 genomes] |
| rs8005882 | 1.00[AMR][1000 genomes] |
| rs8008949 | 1.00[AMR][1000 genomes] |
| rs8017182 | 1.00[AMR][1000 genomes] |
| rs8020682 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832837 | chr14:78766805-78946526 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv983783 | chr14:78819188-78821104 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78814600-78825600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr14:78819400-78822200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 3 | chr14:78820200-78826000 | Enhancers | Brain Germinal Matrix | brain |
