Variant report

Variant	rs8008949
Chromosome Location	chr14:78865316-78865317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr14:78864889-78865376	SH-SY5Y	brain:	n/a	n/a
2	REST	chr14:78865123-78865453	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000239163	TF binding region
NRXN3	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10135111	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135475	1.00[AMR][1000 genomes]
rs11159360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1156946	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1990530	1.00[AMR][1000 genomes]
rs2052202	1.00[AMR][1000 genomes]
rs2052203	1.00[AMR][1000 genomes]
rs2110424	1.00[AMR][1000 genomes]
rs2192413	1.00[AMR][1000 genomes]
rs2192414	1.00[AMR][1000 genomes]
rs2192415	1.00[AMR][1000 genomes]
rs2192421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2215830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2215831	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2215832	1.00[AMR][1000 genomes]
rs2215833	1.00[AMR][1000 genomes]
rs2366099	1.00[AMR][1000 genomes]
rs2366156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2886581	1.00[AMR][1000 genomes]
rs4899709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4903765	1.00[AMR][1000 genomes]
rs6574444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6574449	1.00[AMR][1000 genomes]
rs6574450	1.00[AMR][1000 genomes]
rs7157498	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158579	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159492	1.00[AMR][1000 genomes]
rs728124	1.00[YRI][hapmap]
rs8003367	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003391	1.00[AMR][1000 genomes]
rs8005882	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020588	1.00[YRI][hapmap]
rs8020682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78864600-78866200	Enhancers	Brain Germinal Matrix	brain
2	chr14:78865000-78865400	Enhancers	Brain Anterior Caudate	brain
3	chr14:78865200-78869400	Weak transcription	Brain Angular Gyrus	brain

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