Variant report

Variant	rs10135910
Chromosome Location	chr14:55264409-55264410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10147626	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148966	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12323472	0.90[YRI][hapmap];0.95[AFR][1000 genomes]
rs17127964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014092	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806024	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55241200-55272200	Weak transcription	A549	lung
2	chr14:55257200-55272400	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:55257800-55272400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:55258000-55265000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:55258000-55268000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:55258000-55272200	Weak transcription	Right Ventricle	heart
7	chr14:55261800-55264600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:55262000-55272400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:55262000-55274800	Weak transcription	Spleen	Spleen
10	chr14:55262200-55267200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:55262200-55272400	Weak transcription	Aorta	Aorta
12	chr14:55263200-55264600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:55263400-55264600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:55263400-55264600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:55263800-55265200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:55264400-55265600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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