Variant report

Variant	rs9806024
Chromosome Location	chr14:55269931-55269932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10135910	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141060	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs10147626	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148966	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12323472	0.83[AFR][1000 genomes]
rs17127964	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014092	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55241200-55272200	Weak transcription	A549	lung
2	chr14:55257200-55272400	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:55257800-55272400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:55258000-55272200	Weak transcription	Right Ventricle	heart
5	chr14:55262000-55272400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:55262000-55274800	Weak transcription	Spleen	Spleen
7	chr14:55262200-55272400	Weak transcription	Aorta	Aorta
8	chr14:55269200-55272400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:55269600-55270800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:55269600-55273000	Enhancers	Fetal Intestine Large	intestine
11	chr14:55269800-55270600	Enhancers	Fetal Intestine Small	intestine
12	chr14:55269800-55270600	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr14:55269800-55270800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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