Variant report

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55249239..55250045-chr14:55272502..55273132,4	MCF-7	breast:
2	chr14:55038728..55039319-chr14:55272616..55273275,2	MCF-7	breast:
3	chr14:55271581..55274371-chr14:55277437..55280415,2	MCF-7	breast:
4	chr14:55030863..55032132-chr14:55271983..55273151,4	K562	blood:
5	chr14:55022172..55022846-chr14:55272332..55273108,2	MCF-7	breast:
6	chr14:55272162..55274540-chr14:55368133..55370664,4	MCF-7	breast:
7	chr14:55030910..55034480-chr14:55271107..55275366,4	K562	blood:
8	chr14:55272779..55274320-chr14:55276133..55278224,2	K562	blood:
9	chr14:55031494..55033561-chr14:55270591..55273317,2	K562	blood:
10	chr14:55040891..55043330-chr14:55270490..55273400,2	K562	blood:
11	chr14:55030480..55031593-chr14:55272277..55273148,5	MCF-7	breast:
12	chr14:55240470..55241400-chr14:55272220..55273092,3	MCF-7	breast:
13	chr14:55273057..55275787-chr14:55279144..55281055,2	K562	blood:
14	chr14:55240781..55242402-chr14:55272682..55274467,2	K562	blood:
15	chr14:55270234..55274125-chr14:55367170..55370199,7	MCF-7	breast:
16	chr14:55237445..55239866-chr14:55271701..55273428,2	K562	blood:
17	chr12:120727925..120730773-chr14:55272795..55274366,2	MCF-7	breast:
18	chr14:54973891..54976699-chr14:55272273..55274488,2	K562	blood:
19	chr14:55224993..55226570-chr14:55270689..55273331,2	MCF-7	breast:
20	chr14:55031156..55033292-chr14:55272031..55274309,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10135910	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141060	0.81[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs10144972	0.86[LWK][hapmap]
rs10148966	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12323472	1.00[ASW][hapmap];0.86[LWK][hapmap];0.84[AFR][1000 genomes]
rs17127964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014092	1.00[AMR][1000 genomes]
rs9806024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55262000-55274800	Weak transcription	Spleen	Spleen
2	chr14:55272000-55273200	Enhancers	NHDF-Ad	bronchial
3	chr14:55272200-55273200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr14:55272400-55273200	Enhancers	HSMMtube	muscle
5	chr14:55272600-55273200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
6	chr14:55272600-55274000	Weak transcription	Fetal Kidney	kidney
7	chr14:55272600-55276600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:55273000-55273200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:55273000-55273200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:55273000-55273200	Enhancers	Adipose Nuclei	Adipose
11	chr14:55273000-55274000	Enhancers	HepG2	liver
12	chr14:55273000-55274200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:55273000-55274200	Weak transcription	Brain Substantia Nigra	brain
14	chr14:55273000-55274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:55273000-55281400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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