Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72829562..72831650-chr14:72833232..72835996,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10141305	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10149207	0.94[ASW][hapmap];0.94[CHD][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1072165	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2139596	0.94[CHD][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2190509	1.00[ASN][1000 genomes]
rs2529458	0.87[ASN][1000 genomes]
rs2529459	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2529465	0.87[ASN][1000 genomes]
rs2681724	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681750	1.00[ASN][1000 genomes]
rs2681756	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2681758	0.87[ASN][1000 genomes]
rs2681760	0.87[ASN][1000 genomes]
rs2681763	0.87[ASN][1000 genomes]
rs769148	0.94[CHD][hapmap];0.87[GIH][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs847325	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs847328	0.94[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs847329	0.87[EUR][1000 genomes]
rs847330	0.94[CHD][hapmap];0.85[ASN][1000 genomes]
rs847331	0.82[ASW][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.83[LWK][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs847334	0.94[CHD][hapmap];0.81[GIH][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72829600-72834400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72833200-72834600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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