Variant report

Variant	rs10149207
Chromosome Location	chr14:72837934-72837935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10136263	0.94[ASW][hapmap];0.94[CHD][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10137579	0.85[EUR][1000 genomes]
rs10138152	0.85[EUR][1000 genomes]
rs10141305	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1072165	1.00[ASN][1000 genomes]
rs1099968	0.86[CEU][hapmap]
rs1356842	0.93[YRI][hapmap]
rs1996661	0.86[YRI][hapmap]
rs2139596	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2190508	0.86[CEU][hapmap]
rs2190509	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2222311	0.89[YRI][hapmap]
rs2238195	0.82[YRI][hapmap]
rs2239246	0.92[YRI][hapmap]
rs2332832	0.85[EUR][1000 genomes]
rs2529458	0.87[ASN][1000 genomes]
rs2529459	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2529465	0.87[ASN][1000 genomes]
rs2681724	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2681729	0.93[YRI][hapmap]
rs2681730	0.82[CEU][hapmap]
rs2681732	0.83[AFR][1000 genomes]
rs2681735	0.82[CEU][hapmap]
rs2681736	0.82[CEU][hapmap]
rs2681750	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2681756	1.00[ASN][1000 genomes]
rs2681758	0.87[ASN][1000 genomes]
rs2681760	0.87[ASN][1000 genomes]
rs2681763	0.87[ASN][1000 genomes]
rs7150465	0.85[EUR][1000 genomes]
rs7151325	0.85[EUR][1000 genomes]
rs765221	0.83[YRI][hapmap]
rs769148	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8015917	0.81[CEU][hapmap]
rs847325	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs847328	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs847329	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs847330	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs847331	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs847334	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10149207	TMED10	cis	parietal	SCAN
rs10149207	C14orf43	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72835000-72841800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72836000-72838800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72836000-72851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:72837400-72838600	Weak transcription	Stomach Smooth Muscle	stomach

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