Variant report

Variant	rs2681729
Chromosome Location	chr14:72811748-72811749
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10149207	0.93[YRI][hapmap]
rs1072165	0.89[EUR][1000 genomes]
rs11620677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1356842	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1402063	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1402064	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1996661	0.84[AMR][1000 genomes]
rs2090736	0.84[AMR][1000 genomes]
rs2139596	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs2190509	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs2222311	0.83[YRI][hapmap];0.84[AMR][1000 genomes]
rs2238195	0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2239244	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2239246	0.85[YRI][hapmap];0.86[AMR][1000 genomes]
rs2250557	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2250666	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2529458	0.93[EUR][1000 genomes]
rs2529459	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs2529465	0.93[EUR][1000 genomes]
rs2529474	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2529476	0.82[AMR][1000 genomes]
rs2681724	0.81[EUR][1000 genomes]
rs2681732	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2681738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681739	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2681740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2681750	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs2681756	0.89[EUR][1000 genomes]
rs2681758	0.91[EUR][1000 genomes]
rs2681760	0.92[EUR][1000 genomes]
rs2681763	0.91[EUR][1000 genomes]
rs2681770	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs765221	0.87[AMR][1000 genomes]
rs769148	0.86[CEU][hapmap]
rs847325	0.86[CEU][hapmap]
rs847329	0.87[CEU][hapmap]
rs847330	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs847331	0.93[YRI][hapmap]
rs847334	0.86[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv2757573	chr14:72802736-72819684	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759995	chr14:72802736-72819684	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72810200-72814800	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72810400-72812600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72811600-72811800	Enhancers	Spleen	Spleen

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