Variant report

Variant	rs2250666
Chromosome Location	chr14:72803408-72803409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72800415..72803046-chr14:72803047..72804639,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10146126	0.81[CHB][hapmap];0.81[AMR][1000 genomes]
rs1072165	0.83[EUR][1000 genomes]
rs11620677	1.00[CEU][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1356842	0.86[CEU][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1402063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996661	0.93[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2090736	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2139596	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2190509	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2222311	0.93[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2238195	0.87[CHB][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2239244	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2239246	0.87[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2250557	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2529458	0.87[EUR][1000 genomes]
rs2529459	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2529465	0.87[EUR][1000 genomes]
rs2529474	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2529476	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2681729	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2681732	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2681738	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2681739	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2681740	0.83[JPT][hapmap];0.82[AMR][1000 genomes]
rs2681750	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2681756	0.83[EUR][1000 genomes]
rs2681758	0.85[EUR][1000 genomes]
rs2681760	0.86[EUR][1000 genomes]
rs2681763	0.85[EUR][1000 genomes]
rs2681770	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs765221	0.87[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs769148	0.86[CEU][hapmap]
rs847325	0.86[CEU][hapmap]
rs847329	0.87[CEU][hapmap]
rs847330	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs847334	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs847348	0.84[AMR][1000 genomes]
rs847349	0.84[AMR][1000 genomes]
rs847350	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv2757573	chr14:72802736-72819684	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759995	chr14:72802736-72819684	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72797600-72804800	Enhancers	Fetal Lung	lung
2	chr14:72799200-72804200	Weak transcription	Spleen	Spleen
3	chr14:72801000-72807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72801400-72803800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:72803000-72803600	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links