Variant report

Variant	rs2681770
Chromosome Location	chr14:72807174-72807175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72806003..72809528-chr14:72813549..72815955,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10146126	0.83[AMR][1000 genomes]
rs1072165	0.93[EUR][1000 genomes]
rs11620677	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1356842	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1402063	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1402064	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1996661	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2090736	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2139596	0.93[EUR][1000 genomes]
rs2190509	0.94[EUR][1000 genomes]
rs2222311	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2238195	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2239244	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2239246	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2250557	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2250666	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2529458	0.90[EUR][1000 genomes]
rs2529459	0.93[EUR][1000 genomes]
rs2529465	0.90[EUR][1000 genomes]
rs2529474	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2529476	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2681724	0.84[EUR][1000 genomes]
rs2681729	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2681732	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2681738	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2681739	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2681740	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2681750	0.94[EUR][1000 genomes]
rs2681756	0.93[EUR][1000 genomes]
rs2681758	0.91[EUR][1000 genomes]
rs2681760	0.89[EUR][1000 genomes]
rs2681763	0.88[EUR][1000 genomes]
rs765221	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs847330	0.89[EUR][1000 genomes]
rs847331	0.83[EUR][1000 genomes]
rs847334	0.93[EUR][1000 genomes]
rs847348	0.86[AMR][1000 genomes]
rs847349	0.86[AMR][1000 genomes]
rs847350	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv2757573	chr14:72802736-72819684	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759995	chr14:72802736-72819684	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv819274	chr14:72806021-72810798	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72801000-72807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72804400-72808000	Weak transcription	Spleen	Spleen
3	chr14:72807000-72809200	Strong transcription	Cortex derived primary cultured neurospheres	brain

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