Variant report

Variant	rs847349
Chromosome Location	chr14:72786339-72786340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72785270..72787957-chr14:72798250..72801124,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10146126	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1356842	0.83[AMR][1000 genomes]
rs1996661	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2090736	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2222311	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2238195	0.83[AMR][1000 genomes]
rs2238204	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2238206	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2238207	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2239244	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2239246	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2250666	0.84[AMR][1000 genomes]
rs2529474	0.86[AMR][1000 genomes]
rs2529476	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2681724	0.81[EUR][1000 genomes]
rs2681732	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2681739	0.83[AMR][1000 genomes]
rs2681740	0.81[AMR][1000 genomes]
rs2681770	0.86[AMR][1000 genomes]
rs4899430	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6574061	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6574065	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs699366	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151952	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7156910	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs765221	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs847346	1.00[ASN][1000 genomes]
rs847348	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs847350	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs847364	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72781200-72789400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72786000-72792400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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