Variant report

Variant	rs2090736
Chromosome Location	chr14:72794239-72794240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10146126	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11620677	0.82[AMR][1000 genomes]
rs1356842	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1402063	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1402064	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1996661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2190509	0.81[EUR][1000 genomes]
rs2222311	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2238195	0.87[AMR][1000 genomes]
rs2238204	0.80[AMR][1000 genomes]
rs2238206	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2238207	0.85[AMR][1000 genomes]
rs2239244	0.81[AMR][1000 genomes]
rs2239246	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2250557	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2250666	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2529474	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2529476	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2681724	0.86[EUR][1000 genomes]
rs2681729	0.84[AMR][1000 genomes]
rs2681732	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2681739	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2681740	0.84[AMR][1000 genomes]
rs2681750	0.81[EUR][1000 genomes]
rs2681770	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4899430	0.81[AMR][1000 genomes]
rs6574061	0.80[AMR][1000 genomes]
rs6574065	0.82[AMR][1000 genomes]
rs699366	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151952	0.82[AMR][1000 genomes]
rs765221	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs847331	0.85[EUR][1000 genomes]
rs847346	0.93[ASN][1000 genomes]
rs847348	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847349	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs847350	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72793800-72794600	Enhancers	Colon Smooth Muscle	Colon
2	chr14:72794000-72794400	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:72794000-72794600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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