Variant report

Variant	rs11620677
Chromosome Location	chr14:72808431-72808432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72806003..72809528-chr14:72813549..72815955,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1072165	0.89[EUR][1000 genomes]
rs1356842	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1402063	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1402064	1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1996661	0.86[MEX][hapmap];0.82[AMR][1000 genomes]
rs2090736	0.82[AMR][1000 genomes]
rs2139596	0.85[CEU][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs2190509	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs2222311	0.82[ASW][hapmap];0.82[AMR][1000 genomes]
rs2238195	0.89[ASW][hapmap];0.87[CHD][hapmap];0.90[MEX][hapmap];0.84[AMR][1000 genomes]
rs2239244	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2239246	0.84[AMR][1000 genomes]
rs2250557	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2250666	1.00[CEU][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2529458	0.93[EUR][1000 genomes]
rs2529459	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs2529465	0.93[EUR][1000 genomes]
rs2529474	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2529476	0.80[AMR][1000 genomes]
rs2681724	0.81[EUR][1000 genomes]
rs2681729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2681732	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2681738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2681739	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2681740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2681750	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs2681756	0.89[EUR][1000 genomes]
rs2681758	0.91[EUR][1000 genomes]
rs2681760	0.92[EUR][1000 genomes]
rs2681763	0.91[EUR][1000 genomes]
rs2681770	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs765221	0.83[ASW][hapmap];0.87[CHD][hapmap];0.86[MEX][hapmap];0.85[AMR][1000 genomes]
rs769148	0.86[CEU][hapmap];0.89[GIH][hapmap]
rs847325	0.85[CEU][hapmap]
rs847328	0.86[GIH][hapmap]
rs847329	0.86[CEU][hapmap]
rs847330	1.00[CEU][hapmap];0.98[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs847331	0.95[GIH][hapmap]
rs847334	0.85[CEU][hapmap];0.95[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv2757573	chr14:72802736-72819684	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759995	chr14:72802736-72819684	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv819274	chr14:72806021-72810798	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv442345	chr14:72807404-72810136	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1838508	chr14:72807404-72810140	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72807000-72809200	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72807400-72808800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72808000-72809800	Enhancers	Spleen	Spleen
4	chr14:72808200-72809000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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