Variant report

Variant	rs847329
Chromosome Location	chr14:72830704-72830705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72829562..72831650-chr14:72833232..72835996,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10129799	0.83[CEU][hapmap]
rs10136263	0.87[EUR][1000 genomes]
rs10149207	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1072165	0.86[AMR][1000 genomes]
rs1072166	0.84[CEU][hapmap]
rs11620677	0.86[CEU][hapmap]
rs1402063	0.86[CEU][hapmap]
rs1402064	0.86[CEU][hapmap]
rs2139596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs2190509	1.00[CHB][hapmap]
rs2214965	0.87[CEU][hapmap]
rs2239229	0.82[CEU][hapmap]
rs2239234	0.80[CEU][hapmap]
rs2239235	0.80[CEU][hapmap]
rs2239238	0.80[CEU][hapmap]
rs2239239	0.80[CEU][hapmap]
rs2250666	0.87[CEU][hapmap]
rs2283385	0.83[CEU][hapmap]
rs2529458	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2529459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs2529465	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2529467	0.87[CEU][hapmap]
rs2529469	0.80[CEU][hapmap]
rs2529470	0.80[CEU][hapmap]
rs2529471	0.80[CEU][hapmap]
rs2681727	0.80[CEU][hapmap]
rs2681729	0.87[CEU][hapmap]
rs2681734	0.80[CEU][hapmap]
rs2681738	0.87[CEU][hapmap]
rs2681741	0.80[CEU][hapmap]
rs2681743	0.80[CEU][hapmap]
rs2681749	0.87[CEU][hapmap]
rs2681750	1.00[CHB][hapmap]
rs2681751	0.87[CEU][hapmap]
rs2681753	0.84[CEU][hapmap]
rs2681756	0.86[AMR][1000 genomes]
rs2681758	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2681760	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2681763	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2681769	0.80[CEU][hapmap]
rs2681771	0.80[CEU][hapmap]
rs769148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8003559	0.80[CEU][hapmap]
rs8019358	0.80[CEU][hapmap]
rs8022859	0.80[CEU][hapmap]
rs847325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847328	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs847330	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs847331	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs847334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs886826	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72828000-72831600	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72829600-72834400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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