Variant report

Variant	rs10136789
Chromosome Location	chr14:63356253-63356254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10134735	0.90[EUR][1000 genomes]
rs10146437	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10220698	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11158460	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12590790	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs1543436	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[YRI][hapmap]
rs1956011	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs1956013	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1956014	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs28608483	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1042953	chr14:63314591-63384260	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Body mass index	24348519	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10136789	MNAT1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63355600-63356800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr14:63355800-63356400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr14:63355800-63356400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:63355800-63356600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:63355800-63356800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:63356000-63356400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:63356000-63356400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:63356000-63356600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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