Variant report

Variant	rs11158460
Chromosome Location	chr14:63381272-63381273
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10134735	0.83[EUR][1000 genomes]
rs10136789	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10146437	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10150703	0.85[CEU][hapmap]
rs10220698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12590790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1543436	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs1956011	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs1956013	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1956014	1.00[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs28608483	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042953	chr14:63314591-63384260	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11158460	MNAT1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63380400-63381400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr14:63380600-63381600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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