Variant report
| Variant | rs1956013 |
|---|---|
| Chromosome Location | chr14:63317669-63317670 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:63316604..63319263-chr14:63330704..63332939,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10136789 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs10146437 | 0.86[CHB][hapmap];0.91[JPT][hapmap] |
| rs10220698 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs11158460 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs12590790 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs1543436 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs1956011 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1956014 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap] |
| rs243145 | 0.93[CEU][hapmap] |
| rs243147 | 0.93[CEU][hapmap] |
| rs243158 | 0.94[EUR][1000 genomes] |
| rs4902190 | 0.92[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902015 | chr14:63261862-63356253 | Enhancers Weak transcription ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1042953 | chr14:63314591-63384260 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
