Variant report

Variant	rs10136852
Chromosome Location	chr14:39888439-39888440
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39882950..39886541-chr14:39887581..39892204,4	MCF-7	breast:
2	chr14:39888039..39890423-chr14:39893808..39896011,2	MCF-7	breast:
3	chr14:39887184..39890386-chr14:39899843..39902826,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165355	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10083310	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142724	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10145518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146966	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10148141	0.83[AMR][1000 genomes]
rs10149896	1.00[CHB][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10483537	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872918	0.86[CHB][hapmap]
rs11157068	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11629406	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17109068	0.81[CHD][hapmap]
rs2274397	0.93[CHB][hapmap];0.92[CHD][hapmap];0.95[MEX][hapmap]
rs28689476	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28718785	0.81[AMR][1000 genomes]
rs28839914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4328353	0.83[AMR][1000 genomes]
rs4393482	0.92[CHB][hapmap]
rs4636812	0.83[AMR][1000 genomes]
rs4902542	0.80[AMR][1000 genomes]
rs4902601	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902668	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62000717	0.81[AMR][1000 genomes]
rs62015709	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6571920	0.80[ASW][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.86[MEX][hapmap]
rs7141921	0.80[ASW][hapmap];0.81[CHD][hapmap];0.86[MEX][hapmap]
rs7145382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148572	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[MEX][hapmap];0.94[YRI][hapmap];0.84[AMR][1000 genomes]
rs8016293	0.81[AMR][1000 genomes]
rs8017650	0.86[CHB][hapmap]
rs8018486	1.00[CHB][hapmap]
rs8019758	0.86[CHB][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39863400-39891600	Weak transcription	Small Intestine	intestine
2	chr14:39864600-39898800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:39865000-39891200	Weak transcription	Psoas Muscle	Psoas
4	chr14:39865000-39898200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:39869000-39895600	Weak transcription	Hela-S3	cervix
6	chr14:39882200-39895400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:39885200-39891400	Weak transcription	Gastric	stomach
8	chr14:39886000-39890800	Weak transcription	Fetal Brain Male	brain
9	chr14:39886000-39895600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:39886200-39890600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:39886200-39895600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:39886400-39888600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:39886400-39888600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:39886400-39892600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:39886400-39895600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:39886600-39888800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:39886600-39889000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:39886600-39889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:39886600-39889600	Weak transcription	Left Ventricle	heart
20	chr14:39886600-39890200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:39886600-39890200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:39886600-39890200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:39886600-39890800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr14:39886600-39890800	Weak transcription	Brain Angular Gyrus	brain
25	chr14:39886600-39891200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:39886600-39891200	Weak transcription	Lung	lung
27	chr14:39886600-39891200	Weak transcription	Ovary	ovary
28	chr14:39886600-39891200	Weak transcription	Right Ventricle	heart
29	chr14:39886600-39891400	Weak transcription	Aorta	Aorta
30	chr14:39886600-39891800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:39886600-39894000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:39886600-39894400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:39886600-39895600	Weak transcription	Fetal Lung	lung
34	chr14:39886600-39895800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:39886600-39895800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr14:39886600-39898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:39886600-39900000	Weak transcription	Esophagus	oesophagus
38	chr14:39886600-39900000	Weak transcription	Pancreas	Pancrea
39	chr14:39886800-39889800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr14:39886800-39890200	Weak transcription	Primary T cells from cord blood	blood
41	chr14:39886800-39890200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr14:39886800-39891200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr14:39886800-39892600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:39886800-39895600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr14:39886800-39895600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr14:39886800-39895600	Weak transcription	HepG2	liver
47	chr14:39886800-39895800	Weak transcription	Brain Anterior Caudate	brain
48	chr14:39886800-39895800	Weak transcription	Fetal Thymus	thymus
49	chr14:39886800-39895800	Weak transcription	Thymus	Thymus
50	chr14:39886800-39899200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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