Variant report

Variant	rs10148141
Chromosome Location	chr14:39844718-39844719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39834152..39839984-chr14:39840314..39846059,5	MCF-7	breast:
2	chr14:39643516..39645871-chr14:39842730..39845557,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100941	Chromatin interaction
ENSG00000271424	Chromatin interaction
ENSG00000259083	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10083310	0.83[AMR][1000 genomes]
rs10136852	0.83[AMR][1000 genomes]
rs10139612	0.83[AMR][1000 genomes]
rs10142724	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10145518	0.83[AMR][1000 genomes]
rs10146966	0.80[AMR][1000 genomes]
rs10149896	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274397	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28718785	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28776502	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28839914	0.83[AMR][1000 genomes]
rs4328353	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4636812	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902520	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902542	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902601	0.83[AMR][1000 genomes]
rs4902657	0.83[AMR][1000 genomes]
rs56126634	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61398943	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62000689	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62000717	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6571920	0.81[EUR][1000 genomes]
rs7145382	0.83[AMR][1000 genomes]
rs7148572	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7149197	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7150685	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7494635	0.83[ASN][1000 genomes]
rs8016293	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8018486	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8019758	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39770800-39872400	Weak transcription	Colonic Mucosa	Colon
2	chr14:39803000-39845800	Weak transcription	NHEK	skin
3	chr14:39803200-39845800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:39812200-39845800	Weak transcription	Stomach Mucosa	stomach
5	chr14:39816800-39850200	Weak transcription	Fetal Kidney	kidney
6	chr14:39818800-39845200	Weak transcription	Placenta	Placenta
7	chr14:39818800-39867200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:39834000-39851600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:39834600-39846000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:39834600-39851600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr14:39834800-39846000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:39835000-39851600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr14:39835200-39851600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr14:39835400-39851400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr14:39835400-39872400	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:39836000-39845600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:39836200-39872800	Weak transcription	Esophagus	oesophagus
18	chr14:39836400-39870600	Weak transcription	Gastric	stomach
19	chr14:39836600-39845800	Weak transcription	Right Atrium	heart
20	chr14:39836600-39852600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr14:39836800-39845800	Weak transcription	Brain Anterior Caudate	brain
22	chr14:39836800-39845800	Weak transcription	Right Ventricle	heart
23	chr14:39837000-39852600	Weak transcription	Primary T cells from cord blood	blood
24	chr14:39837600-39845800	Weak transcription	Brain Angular Gyrus	brain
25	chr14:39837600-39845800	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:39837600-39845800	Weak transcription	Fetal Heart	heart
27	chr14:39837600-39845800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr14:39837600-39846000	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:39837600-39846000	Weak transcription	HSMMtube	muscle
30	chr14:39837800-39845800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:39837800-39851600	Weak transcription	Dnd41	blood
32	chr14:39838400-39845600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr14:39838600-39845800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:39838600-39850800	Weak transcription	Fetal Thymus	thymus
35	chr14:39838800-39845600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr14:39838800-39845800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr14:39839000-39845800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:39839800-39850000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:39840000-39845800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr14:39840000-39845800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr14:39840000-39845800	Weak transcription	Adipose Nuclei	Adipose
42	chr14:39840000-39846000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr14:39840000-39846000	Weak transcription	Ovary	ovary
44	chr14:39840000-39846200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr14:39840000-39850400	Weak transcription	Aorta	Aorta
46	chr14:39840000-39851600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:39840000-39852600	Weak transcription	Thymus	Thymus
48	chr14:39840000-39855000	Weak transcription	Fetal Stomach	stomach
49	chr14:39840000-39856000	Weak transcription	Fetal Intestine Small	intestine
50	chr14:39840000-39863200	Weak transcription	Fetal Muscle Trunk	muscle

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