Variant report

Variant	rs10149896
Chromosome Location	chr14:39850261-39850262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39837819..39839330-chr14:39849580..39852012,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10083310	0.93[CHB][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10136852	1.00[CHB][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10139612	1.00[CHB][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10142724	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145518	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10146966	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10148141	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10483537	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10872918	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11157068	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11629406	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17109068	0.90[JPT][hapmap]
rs17109118	0.90[JPT][hapmap]
rs17693410	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2274397	0.86[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28689476	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28718785	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28776502	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28839914	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4328353	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4393482	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4636812	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4899200	0.81[JPT][hapmap]
rs4902520	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4902542	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902601	0.93[CHB][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4902657	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4902668	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56126634	0.85[AMR][1000 genomes]
rs61398943	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62000689	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62000717	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62015709	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6571920	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7141921	0.90[JPT][hapmap]
rs7145382	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7148572	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7149197	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7150685	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8016293	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8017650	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs8018486	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8019758	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39770800-39872400	Weak transcription	Colonic Mucosa	Colon
2	chr14:39818800-39867200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:39834000-39851600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:39834600-39851600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:39835000-39851600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:39835200-39851600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:39835400-39851400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:39835400-39872400	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:39836200-39872800	Weak transcription	Esophagus	oesophagus
10	chr14:39836400-39870600	Weak transcription	Gastric	stomach
11	chr14:39836600-39852600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr14:39837000-39852600	Weak transcription	Primary T cells from cord blood	blood
13	chr14:39837800-39851600	Weak transcription	Dnd41	blood
14	chr14:39838600-39850800	Weak transcription	Fetal Thymus	thymus
15	chr14:39840000-39850400	Weak transcription	Aorta	Aorta
16	chr14:39840000-39851600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:39840000-39852600	Weak transcription	Thymus	Thymus
18	chr14:39840000-39855000	Weak transcription	Fetal Stomach	stomach
19	chr14:39840000-39856000	Weak transcription	Fetal Intestine Small	intestine
20	chr14:39840000-39863200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr14:39840000-39863400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:39840000-39864000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:39840000-39867000	Weak transcription	Left Ventricle	heart
24	chr14:39840000-39867400	Weak transcription	Pancreas	Pancrea
25	chr14:39840000-39882600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:39840200-39850800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:39840200-39851600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr14:39840200-39852200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr14:39840200-39867200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:39840600-39864400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr14:39841000-39865800	Weak transcription	Primary B cells from cord blood	blood
32	chr14:39841200-39867000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr14:39841400-39862800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:39841600-39851200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:39846200-39850400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:39846200-39850600	Weak transcription	Brain Substantia Nigra	brain
37	chr14:39846200-39851200	Weak transcription	Brain Anterior Caudate	brain
38	chr14:39846200-39864800	Weak transcription	NHEK	skin
39	chr14:39846200-39878800	Weak transcription	Right Ventricle	heart
40	chr14:39846400-39857200	Weak transcription	Liver	Liver
41	chr14:39846400-39862400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:39846400-39864600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:39846400-39867200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr14:39846600-39851400	Weak transcription	Fetal Intestine Large	intestine
45	chr14:39846600-39851400	Weak transcription	Stomach Mucosa	stomach
46	chr14:39846600-39862600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr14:39846600-39864600	Weak transcription	HepG2	liver
48	chr14:39846600-39864600	Weak transcription	NH-A	brain
49	chr14:39846600-39864800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:39846600-39866600	Weak transcription	Muscle Satellite Cultured Cells	--

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