Variant report

Variant	rs10137393
Chromosome Location	chr14:79222451-79222452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10129219	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10144083	1.00[CEU][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10145149	0.94[CEU][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs10149743	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108215	0.81[CEU][hapmap]
rs6574470	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7141042	0.94[CEU][hapmap];0.84[JPT][hapmap]
rs7141475	0.93[CEU][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap];0.82[TSI][hapmap]
rs7144393	0.97[GIH][hapmap];0.81[MEX][hapmap]
rs7145730	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7149051	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7150361	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8020920	0.81[GIH][hapmap]
rs929920	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs929921	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs987644	0.94[CEU][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs9972280	0.94[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10137393	ZDHHC22	cis	parietal	SCAN
rs10137393	NPC2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79219200-79223400	Weak transcription	Brain Hippocampus Middle	brain
2	chr14:79219400-79224400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:79219400-79224400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:79219600-79223000	Weak transcription	Brain Substantia Nigra	brain
5	chr14:79219600-79224200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:79219600-79224800	Weak transcription	Brain Angular Gyrus	brain
7	chr14:79222400-79224600	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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