Variant report

Variant	rs10139623
Chromosome Location	chr14:55712370-55712371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr14:55712347-55712861	MCF-7	breast:	n/a	n/a
2	RAD21	chr14:55712311-55712834	MCF-7	breast:	n/a	n/a
3	RAD21	chr14:55712358-55712820	A549	lung:	n/a	n/a
4	CTCF	chr14:55712349-55712701	H1-hESC	embryonic stem cell:	n/a	n/a
5	MYC	chr14:55712365-55712726	MCF10A-Er-Src	breast:	n/a	n/a
6	RAD21	chr14:55712278-55713051	SK-N-SH	brain:	n/a	n/a
7	RAD21	chr14:55712261-55712824	HCT-116	colon:	n/a	n/a
8	SMC3	chr14:55712211-55712862	SK-N-SH	brain:	n/a	n/a
9	CTCF	chr14:55712338-55712868	MCF-7	breast:	n/a	n/a
10	CTCF	chr14:55712335-55712953	HCT-116	colon:	n/a	n/a
11	CTCF	chr14:55712339-55712821	HCT-116	colon:	n/a	n/a
12	CTCF	chr14:55712175-55712784	IMR90	lung:	n/a	n/a
13	CTCF	chr14:55712300-55712450	WI-38	lung:	n/a	n/a
14	CTCF	chr14:55712340-55712914	MCF-7	breast:	n/a	n/a
15	SMC3	chr14:55712369-55712766	GM12878	blood:	n/a	n/a
16	RAD21	chr14:55712329-55712850	HCT-116	colon:	n/a	n/a
17	CTCF	chr14:55712171-55712985	A549	lung:	n/a	n/a
18	RAD21	chr14:55712333-55712737	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr14:55712040-55712942	SK-N-SH	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55706022..55708410-chr14:55710949..55713300,2	K562	blood:
2	chr14:55709704..55712679-chr14:55737747..55740445,2	K562	blood:
3	chr14:55706701..55708410-chr14:55710949..55712624,2	K562	blood:
4	chr14:55710760..55712909-chr14:55714004..55716438,2	K562	blood:
5	chr14:55712140..55713012-chr14:55821024..55821977,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000271180	TF binding region
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction
ENSG00000271180	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10136821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11158032	1.00[AMR][1000 genomes]
rs28445131	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28564748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28667867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7153537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159339	1.00[EUR][1000 genomes]
rs73273690	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273692	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273693	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010658	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919892	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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