Variant report

Variant	rs73273692
Chromosome Location	chr14:55707908-55707909
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr14:55707487-55707982	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr14:55707579-55707921	H1-hESC	embryonic stem cell:	n/a	n/a
3	E2F6	chr14:55707504-55708020	H1-hESC	embryonic stem cell:	n/a	n/a
4	TEAD4	chr14:55707456-55707920	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr14:55707507-55707973	H1-hESC	embryonic stem cell:	n/a	n/a
6	TEAD4	chr14:55707586-55707973	H1-hESC	embryonic stem cell:	n/a	n/a
7	TBP	chr14:55707607-55707916	H1-hESC	embryonic stem cell:	n/a	n/a
8	RAD21	chr14:55707462-55707916	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:55707866-55707916	IMR90	lung:	fetal
2	chr14:55707866-55707916	GM12891	blood:	n/a
3	chr14:55707866-55707916	H1-hESC	embryonic stem cell:	embryo
4	chr14:55707866-55707916	GM06990	blood:	n/a
5	chr14:55707866-55707916	BJ	skin:	n/a
6	chr14:55707866-55707916	A549	lung:	n/a
7	chr14:55707866-55707916	MCF-7	breast:	n/a
8	chr14:55707866-55707916	GM12878	blood:	n/a
9	chr14:55707866-55707916	HEEpiC	esophagus:	n/a
10	chr14:55707866-55707916	NHDF-neo	bronchial:	n/a
11	chr14:55707866-55707916	SK-N-SH	brain:	n/a
12	chr14:55707866-55707916	HUVEC	blood vessel:	n/a
13	chr14:55707866-55707916	AG04450	lung:	fetal
14	chr14:55707866-55707916	HRCEpiC	kidney:	n/a
15	chr14:55707866-55707916	HepG2	liver:	n/a
16	chr14:55707866-55707916	LNCaP	prostate:	n/a
17	chr14:55707866-55707916	Hela-S3	cervix:	n/a
18	chr14:55707866-55707916	PANC-1	pancreas:	n/a
19	chr14:55707866-55707916	BE2_C	brain:	n/a
20	chr14:55707866-55707916	U87	brain:	n/a
21	chr14:55707866-55707916	AG09319	gingival:	n/a
22	chr14:55707866-55707916	HMEC	breast:	n/a
23	chr14:55707866-55707916	SAEC	small airway:	n/a
24	chr14:55707866-55707916	NHBE	bronchial:	n/a
25	chr14:55707866-55707916	Jurkat	blood:	n/a
26	chr14:55707866-55707916	PFSK-1	brain:	n/a
27	chr14:55707866-55707916	NB4	blood:	n/a
28	chr14:55707866-55707916	HNPCEpiC	eye:	n/a
29	chr14:55707866-55707916	HCPEpiC	choroid plexus:	n/a
30	chr14:55707866-55707916	ECC-1	luminal epithelium:	n/a
31	chr14:55707866-55707916	CMK	blood:	n/a
32	chr14:55707866-55707916	HIPEpiC	eye:	n/a
33	chr14:55707866-55707916	ProgFib	skin:	n/a
34	chr14:55707866-55707916	ovcar-3	ovarian:	n/a
35	chr14:55707866-55707916	HCM	heart:	n/a
36	chr14:55707866-55707916	SKMC	muscle:	n/a
37	chr14:55707866-55707916	T-47D	breast:	n/a
38	chr14:55707866-55707916	AG09309	skin:	n/a
39	chr14:55707866-55707916	GM12892	blood:	n/a
40	chr14:55707866-55707916	MCF10A-Er-Src	breast:	n/a
41	chr14:55707866-55707916	HCF	heart:	n/a
42	chr14:55707866-55707916	RPTEC	kidney:	n/a
43	chr14:55707866-55707916	Caco-2	colon:	n/a
44	chr14:55707866-55707916	HEK293	kidney:	embryo
45	chr14:55707866-55707916	HCT-116	colon:	n/a
46	chr14:55707866-55707916	AG04449	skin:	fetal
47	chr14:55707866-55707916	SK-N-SH_RA	brain:	n/a
48	chr14:55707866-55707916	SK-N-MC	brain:	n/a
49	chr14:55707866-55707916	HL-60	blood:	n/a
50	chr14:55707866-55707916	NH-A	brain:	n/a

No data

Variant related genes	Relation type
ENSG00000271180	TF binding region
ENSG00000271180	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10136821	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139623	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11158032	1.00[AMR][1000 genomes]
rs28445131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28564748	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28667867	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7153537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159339	1.00[EUR][1000 genomes]
rs73273690	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010658	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55707400-55708000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr14:55707400-55708200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr14:55707600-55708000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
4	chr14:55707600-55708000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr14:55707600-55708000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:55707600-55708000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:55707600-55708000	Active TSS	Brain Anterior Caudate	brain
8	chr14:55707600-55708000	Enhancers	Lung	lung
9	chr14:55707600-55708200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr14:55707600-55708200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:55707600-55708200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:55707600-55708200	Bivalent Enhancer	Psoas Muscle	Psoas
13	chr14:55707800-55708000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:55707800-55708000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:55707800-55708200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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