Variant report

Variant	rs10139963
Chromosome Location	chr14:32235134-32235135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10131398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10131543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10132839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138578	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10139898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10141659	0.83[YRI][hapmap]
rs10145898	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10148949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10150219	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11156699	1.00[CHB][hapmap]
rs11624477	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs12050202	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12886367	0.83[YRI][hapmap]
rs12897779	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1367317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373013	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1373014	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1373015	1.00[ASN][1000 genomes]
rs1897141	0.81[YRI][hapmap]
rs2120134	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs2163301	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28411824	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28842188	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28876523	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28888200	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4619303	0.88[YRI][hapmap]
rs4981115	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs4981890	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981893	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981904	0.82[YRI][hapmap]
rs4981906	0.88[YRI][hapmap]
rs4981913	1.00[ASN][1000 genomes]
rs58117033	1.00[ASN][1000 genomes]
rs6571461	1.00[ASN][1000 genomes]
rs7147785	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149151	0.88[YRI][hapmap]
rs7153589	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs73253205	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74043623	1.00[ASN][1000 genomes]
rs8008383	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs8012682	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8015946	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs8018230	1.00[ASN][1000 genomes]
rs8022541	0.88[YRI][hapmap]
rs9943968	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9944113	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9989137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv456199	chr14:32183849-32241873	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv564183	chr14:32183849-32241873	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32222600-32270200	Weak transcription	Aorta	Aorta
2	chr14:32232600-32235600	Weak transcription	Small Intestine	intestine
3	chr14:32233800-32238600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:32235000-32236200	Enhancers	HepG2	liver
5	chr14:32235000-32241000	Weak transcription	Psoas Muscle	Psoas

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