Variant report

Variant	rs11624477
Chromosome Location	chr14:32161591-32161592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10131398	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10131543	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10132839	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10133374	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134196	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs10138578	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10138795	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139898	1.00[CHB][hapmap]
rs10139963	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10140944	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148949	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11156691	0.82[YRI][hapmap]
rs11156692	0.88[YRI][hapmap]
rs11156699	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11628555	0.89[YRI][hapmap]
rs12050202	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12050415	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12433808	0.89[YRI][hapmap]
rs12897779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1367317	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs1373013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1373014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1373015	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17098061	1.00[YRI][hapmap]
rs2120134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378896	0.90[YRI][hapmap]
rs4981115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981892	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs59626793	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571457	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6571461	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7146010	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147785	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7153589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73253205	1.00[ASN][1000 genomes]
rs8008383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009008	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013999	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8015946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018230	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8020297	0.89[CEU][hapmap]
rs9989137	0.90[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	esv3414517	chr14:32144250-32168719	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32135800-32170800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr14:32141400-32175800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:32142200-32166200	Weak transcription	Primary B cells from cord blood	blood
4	chr14:32145600-32170600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr14:32148000-32183600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:32148400-32165400	Weak transcription	HepG2	liver
7	chr14:32152400-32173000	Weak transcription	Ovary	ovary
8	chr14:32153800-32170600	Weak transcription	Primary T cells from cord blood	blood
9	chr14:32155400-32173000	Weak transcription	Aorta	Aorta
10	chr14:32159000-32184800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:32160600-32161600	Enhancers	Fetal Brain Female	brain
12	chr14:32160800-32162600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:32161000-32161600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr14:32161200-32161600	Weak transcription	Brain Germinal Matrix	brain
15	chr14:32161400-32161600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:32161400-32161800	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:32161400-32162200	Enhancers	Fetal Brain Male	brain

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