Variant report

Variant	rs8020297
Chromosome Location	chr14:32025638-32025639
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10131398	1.00[CEU][hapmap];0.89[GIH][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs10131543	1.00[CEU][hapmap];0.89[GIH][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs10132839	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10138578	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10145898	0.89[EUR][1000 genomes]
rs10148949	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11156699	0.89[GIH][hapmap]
rs11624477	0.89[CEU][hapmap]
rs11625850	1.00[ASN][1000 genomes]
rs12897779	0.90[CEU][hapmap]
rs1367317	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs1373013	0.89[CEU][hapmap]
rs1373014	0.90[CEU][hapmap]
rs2120134	0.90[CEU][hapmap]
rs2163301	0.83[EUR][1000 genomes]
rs28411824	0.89[EUR][1000 genomes]
rs28842188	0.89[EUR][1000 genomes]
rs28876523	0.89[EUR][1000 genomes]
rs28888200	0.89[EUR][1000 genomes]
rs4981115	0.90[CEU][hapmap];0.89[GIH][hapmap]
rs4981890	0.85[EUR][1000 genomes]
rs4981892	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4981893	0.85[EUR][1000 genomes]
rs7147785	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7153589	0.90[CEU][hapmap];0.95[GIH][hapmap]
rs73253205	0.89[EUR][1000 genomes]
rs8006734	1.00[ASN][1000 genomes]
rs8008383	0.90[CEU][hapmap]
rs8012682	0.89[EUR][1000 genomes]
rs8015946	0.89[CEU][hapmap]
rs9943968	0.85[EUR][1000 genomes]
rs9944113	0.89[EUR][1000 genomes]
rs9989137	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32024000-32030000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:32025000-32029800	Weak transcription	Fetal Heart	heart
3	chr14:32025200-32025800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:32025600-32025800	Weak transcription	Placenta Amnion	Placenta Amnion

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