Variant report

Variant	rs28888200
Chromosome Location	chr14:32137958-32137959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10131398	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10131543	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10132839	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10134196	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10138578	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139898	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10139963	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10145898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148949	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150219	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1367317	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2163301	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28411824	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28842188	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28876523	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4981890	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4981892	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4981893	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7147785	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73253205	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8012682	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020297	0.89[EUR][1000 genomes]
rs9943968	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9944113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9989137	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32117000-32148200	Weak transcription	Pancreas	Pancrea
2	chr14:32135200-32147000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:32135400-32147000	Weak transcription	HepG2	liver
4	chr14:32135800-32170800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:32136000-32144200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:32136200-32147000	Weak transcription	Fetal Stomach	stomach
7	chr14:32137000-32138200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:32137000-32146800	Weak transcription	Spleen	Spleen
9	chr14:32137200-32138000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr14:32137200-32138200	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr14:32137200-32147000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:32137200-32147400	Weak transcription	Left Ventricle	heart
13	chr14:32137200-32149400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr14:32137600-32138200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:32137600-32146800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:32137800-32138200	ZNF genes & repeats	Lung	lung

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