Variant report

Variant	rs1014059
Chromosome Location	chr7:69823612-69823613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10085696	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262697	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10499813	0.86[ASN][1000 genomes]
rs12113555	0.86[ASN][1000 genomes]
rs12155144	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698846	0.83[ASN][1000 genomes]
rs12698847	0.83[ASN][1000 genomes]
rs12698850	0.81[ASN][1000 genomes]
rs12698853	0.85[ASN][1000 genomes]
rs12698856	0.86[ASN][1000 genomes]
rs12698857	0.86[ASN][1000 genomes]
rs12698859	0.83[ASN][1000 genomes]
rs12698862	0.84[ASN][1000 genomes]
rs12698869	0.86[ASN][1000 genomes]
rs12698875	0.88[ASN][1000 genomes]
rs12698879	0.92[ASN][1000 genomes]
rs12698880	0.92[ASN][1000 genomes]
rs12698882	0.83[EUR][1000 genomes]
rs12698883	0.83[EUR][1000 genomes]
rs12698884	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12698886	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698892	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698893	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12698895	0.83[JPT][hapmap]
rs13229686	0.83[EUR][1000 genomes]
rs13238017	0.83[EUR][1000 genomes]
rs13340492	0.87[EUR][1000 genomes]
rs1404275	0.92[ASN][1000 genomes]
rs1476104	0.83[ASN][1000 genomes]
rs17604001	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17762460	0.83[EUR][1000 genomes]
rs1880369	0.86[ASN][1000 genomes]
rs2030706	0.82[EUR][1000 genomes]
rs2866275	0.83[EUR][1000 genomes]
rs35062112	0.92[ASN][1000 genomes]
rs4475377	0.92[ASN][1000 genomes]
rs66936223	0.87[EUR][1000 genomes]
rs6943610	0.83[ASN][1000 genomes]
rs6943630	0.84[ASN][1000 genomes]
rs6945241	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6946066	0.86[ASN][1000 genomes]
rs6948676	0.86[ASN][1000 genomes]
rs6953075	0.87[EUR][1000 genomes]
rs6964139	0.84[ASN][1000 genomes]
rs6971237	0.83[EUR][1000 genomes]
rs6975814	0.87[EUR][1000 genomes]
rs6978841	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6978919	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7782771	0.86[ASN][1000 genomes]
rs7783592	0.86[ASN][1000 genomes]
rs7790084	0.83[ASN][1000 genomes]
rs7791954	0.86[ASN][1000 genomes]
rs7796592	0.80[ASN][1000 genomes]
rs7803814	0.86[ASN][1000 genomes]
rs7807263	0.86[ASN][1000 genomes]
rs7808588	0.92[ASN][1000 genomes]
rs870919	0.86[ASN][1000 genomes]
rs9638582	0.83[ASN][1000 genomes]
rs9647931	0.86[EUR][1000 genomes]
rs9647932	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1028870	chr7:69742438-69879231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1029586	chr7:69817143-69978454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv538927	chr7:69817143-69978454	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69818600-69824600	Weak transcription	Right Atrium	heart
2	chr7:69819400-69825200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:69820200-69823800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:69820600-69825600	Weak transcription	Dnd41	blood
5	chr7:69821200-69825200	Weak transcription	Fetal Heart	heart
6	chr7:69821200-69828800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:69821800-69825400	Weak transcription	Fetal Brain Male	brain
8	chr7:69822000-69830600	Weak transcription	Adipose Nuclei	Adipose
9	chr7:69822200-69827400	Weak transcription	Fetal Stomach	stomach
10	chr7:69823600-69823800	Enhancers	Gastric	stomach

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