Variant report

Variant	rs6978841
Chromosome Location	chr7:69793380-69793381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10085696	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014059	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262697	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499813	0.84[ASN][1000 genomes]
rs12113555	0.84[ASN][1000 genomes]
rs12155144	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698841	0.80[ASN][1000 genomes]
rs12698843	0.81[ASN][1000 genomes]
rs12698846	0.81[ASN][1000 genomes]
rs12698847	0.81[ASN][1000 genomes]
rs12698853	0.83[ASN][1000 genomes]
rs12698856	0.84[ASN][1000 genomes]
rs12698857	0.84[ASN][1000 genomes]
rs12698859	0.81[ASN][1000 genomes]
rs12698862	0.82[ASN][1000 genomes]
rs12698869	0.84[ASN][1000 genomes]
rs12698875	0.86[ASN][1000 genomes]
rs12698879	0.90[ASN][1000 genomes]
rs12698880	0.90[ASN][1000 genomes]
rs12698882	0.83[EUR][1000 genomes]
rs12698883	0.83[EUR][1000 genomes]
rs12698884	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12698886	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698892	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698893	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229686	0.83[EUR][1000 genomes]
rs13238017	0.83[EUR][1000 genomes]
rs13242485	0.80[ASN][1000 genomes]
rs13340492	0.87[EUR][1000 genomes]
rs1404275	0.90[ASN][1000 genomes]
rs1476104	0.81[ASN][1000 genomes]
rs17365333	0.81[ASN][1000 genomes]
rs17604001	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17762460	0.83[EUR][1000 genomes]
rs1880369	0.84[ASN][1000 genomes]
rs2030706	0.82[EUR][1000 genomes]
rs2866275	0.83[EUR][1000 genomes]
rs35062112	0.90[ASN][1000 genomes]
rs4475377	0.90[ASN][1000 genomes]
rs66936223	0.87[EUR][1000 genomes]
rs6943610	0.81[ASN][1000 genomes]
rs6943630	0.82[ASN][1000 genomes]
rs6945241	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6946066	0.84[ASN][1000 genomes]
rs6948676	0.84[ASN][1000 genomes]
rs6953075	0.87[EUR][1000 genomes]
rs6964139	0.82[ASN][1000 genomes]
rs6971237	0.83[EUR][1000 genomes]
rs6975814	0.87[EUR][1000 genomes]
rs6978919	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs735060	0.81[ASN][1000 genomes]
rs7779308	0.80[ASN][1000 genomes]
rs7782771	0.84[ASN][1000 genomes]
rs7783592	0.84[ASN][1000 genomes]
rs7790084	0.81[ASN][1000 genomes]
rs7791954	0.84[ASN][1000 genomes]
rs7803814	0.84[ASN][1000 genomes]
rs7807263	0.84[ASN][1000 genomes]
rs7808588	0.90[ASN][1000 genomes]
rs870919	0.84[ASN][1000 genomes]
rs9638582	0.81[ASN][1000 genomes]
rs9647931	0.85[EUR][1000 genomes]
rs9647932	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1028870	chr7:69742438-69879231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69779600-69802200	Weak transcription	Primary B cells from cord blood	blood

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