Variant report

Variant	rs7779308
Chromosome Location	chr7:69529374-69529375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1008379	0.81[ASN][1000 genomes]
rs10085696	0.80[ASN][1000 genomes]
rs10234205	0.80[EUR][1000 genomes]
rs10262697	0.80[ASN][1000 genomes]
rs10268235	0.81[EUR][1000 genomes]
rs10499813	0.96[ASN][1000 genomes]
rs11767997	0.80[EUR][1000 genomes]
rs12112758	0.84[AFR][1000 genomes]
rs12113555	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12155144	0.80[ASN][1000 genomes]
rs12667561	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12669794	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12673575	0.83[AFR][1000 genomes]
rs12698812	0.82[ASN][1000 genomes]
rs12698814	0.82[ASN][1000 genomes]
rs12698815	0.86[ASN][1000 genomes]
rs12698820	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12698826	0.85[AMR][1000 genomes]
rs12698835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12698838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698843	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698846	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698847	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698850	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12698851	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12698853	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12698856	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12698857	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12698859	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12698861	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12698862	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12698864	0.85[AFR][1000 genomes]
rs12698865	0.83[AFR][1000 genomes]
rs12698867	0.83[AFR][1000 genomes]
rs12698869	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12698873	0.84[AFR][1000 genomes]
rs12698875	0.93[ASN][1000 genomes]
rs12698879	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12698880	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12698883	0.81[AFR][1000 genomes]
rs12698884	0.86[ASN][1000 genomes]
rs12698886	0.84[ASN][1000 genomes]
rs12698892	0.80[ASN][1000 genomes]
rs12698893	0.80[ASN][1000 genomes]
rs13228464	0.81[ASN][1000 genomes]
rs13229395	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13229686	0.81[AFR][1000 genomes]
rs13231497	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236841	0.88[ASN][1000 genomes]
rs13242485	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247796	0.90[ASN][1000 genomes]
rs1404275	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1476104	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1476105	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17365011	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17365333	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17365375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17458097	0.85[ASN][1000 genomes]
rs17462837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17604001	0.87[ASN][1000 genomes]
rs17762460	0.81[AFR][1000 genomes]
rs1880369	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2030705	0.81[AFR][1000 genomes]
rs2030706	0.81[AFR][1000 genomes]
rs2159679	0.81[ASN][1000 genomes]
rs2866275	0.81[AFR][1000 genomes]
rs2903097	0.80[ASN][1000 genomes]
rs34249708	0.80[ASN][1000 genomes]
rs34519726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35062112	0.89[ASN][1000 genomes]
rs35317642	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4318956	0.87[AFR][1000 genomes]
rs4475377	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4623296	0.88[AFR][1000 genomes]
rs58849135	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60739014	0.80[ASN][1000 genomes]
rs6460539	0.86[AFR][1000 genomes]
rs67847242	0.85[AFR][1000 genomes]
rs6943610	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6943630	0.93[ASN][1000 genomes]
rs6944725	0.80[EUR][1000 genomes]
rs6946066	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6948676	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6950485	0.80[EUR][1000 genomes]
rs6951909	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6963101	0.80[ASN][1000 genomes]
rs6964139	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6970670	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6978841	0.80[ASN][1000 genomes]
rs6978919	0.84[ASN][1000 genomes]
rs73442405	0.80[EUR][1000 genomes]
rs735060	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs763759	0.85[ASN][1000 genomes]
rs7780640	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7781403	0.80[ASN][1000 genomes]
rs7782771	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7783039	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7783592	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7783748	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7790084	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7791954	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7796592	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7799192	0.82[AFR][1000 genomes]
rs7800317	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7800759	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7803814	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7806363	0.82[AFR][1000 genomes]
rs7807263	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7808588	0.89[ASN][1000 genomes]
rs7808773	0.81[ASN][1000 genomes]
rs870919	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs877188	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs917717	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9638575	0.86[ASN][1000 genomes]
rs9638582	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9691023	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1022932	chr7:69496659-69564369	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv538925	chr7:69496659-69564369	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1034817	chr7:69507871-69578892	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv538926	chr7:69507871-69578892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1028975	chr7:69513266-69578892	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69517800-69533600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:69526000-69537400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:69526400-69536400	Weak transcription	Right Atrium	heart
4	chr7:69527200-69529800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr7:69527400-69529600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:69527400-69529600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr7:69527600-69529400	Enhancers	Adipose Nuclei	Adipose
8	chr7:69527600-69529800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:69527800-69529400	Enhancers	Brain Anterior Caudate	brain
10	chr7:69527800-69529400	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:69527800-69529400	Enhancers	Brain Hippocampus Middle	brain
12	chr7:69528000-69529400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:69528000-69529600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:69528000-69529600	Enhancers	Fetal Muscle Leg	muscle
15	chr7:69528200-69529400	Weak transcription	Right Ventricle	heart
16	chr7:69528400-69529400	Enhancers	Brain Substantia Nigra	brain
17	chr7:69528400-69529600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:69528600-69529400	Enhancers	Left Ventricle	heart
19	chr7:69528600-69529600	Enhancers	Fetal Stomach	stomach
20	chr7:69528600-69529600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:69528600-69529800	Enhancers	Fetal Heart	heart
22	chr7:69528600-69529800	Enhancers	Fetal Lung	lung
23	chr7:69528800-69529600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:69528800-69533800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:69529000-69529400	Enhancers	Stomach Smooth Muscle	stomach
26	chr7:69529000-69536200	Weak transcription	Psoas Muscle	Psoas
27	chr7:69529200-69529400	Enhancers	Fetal Thymus	thymus
28	chr7:69529200-69529600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:69529200-69533200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:69529200-69536400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links