Variant report

Variant	rs2903097
Chromosome Location	chr7:69337749-69337750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1008379	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10085775	0.83[ASN][1000 genomes]
rs10237145	0.83[ASN][1000 genomes]
rs10241485	0.83[ASN][1000 genomes]
rs11765886	0.81[ASN][1000 genomes]
rs11974201	0.81[EUR][1000 genomes]
rs12698812	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698814	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698815	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12698820	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12698826	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12698838	0.80[ASN][1000 genomes]
rs12698841	0.80[ASN][1000 genomes]
rs13228464	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13231497	0.80[ASN][1000 genomes]
rs13232095	0.90[ASN][1000 genomes]
rs13236841	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13242485	0.80[ASN][1000 genomes]
rs17140980	0.81[EUR][1000 genomes]
rs17140982	0.81[EUR][1000 genomes]
rs17353815	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17365011	0.83[ASN][1000 genomes]
rs17458097	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2058395	0.83[ASN][1000 genomes]
rs210598	0.87[ASN][1000 genomes]
rs210600	0.83[ASN][1000 genomes]
rs210603	0.83[ASN][1000 genomes]
rs2159679	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2865805	0.81[EUR][1000 genomes]
rs34249708	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35322474	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4717521	0.83[ASN][1000 genomes]
rs521259	0.83[ASN][1000 genomes]
rs60739014	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs608796	0.87[ASN][1000 genomes]
rs622767	0.87[ASN][1000 genomes]
rs6955815	0.83[ASN][1000 genomes]
rs6959766	0.87[ASN][1000 genomes]
rs6963101	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974004	0.83[ASN][1000 genomes]
rs726372	0.81[EUR][1000 genomes]
rs763759	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7779308	0.80[ASN][1000 genomes]
rs7781403	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7793984	0.83[ASN][1000 genomes]
rs7796592	0.82[ASN][1000 genomes]
rs7808773	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9638575	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69311400-69371600	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69330400-69338000	Weak transcription	Thymus	Thymus
3	chr7:69335600-69337800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:69335600-69338600	Enhancers	Fetal Intestine Small	intestine
5	chr7:69335600-69339400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:69335800-69339400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:69336000-69338800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:69336000-69338800	Enhancers	Dnd41	blood
9	chr7:69336000-69339200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr7:69336200-69338600	Enhancers	Fetal Intestine Large	intestine
11	chr7:69336200-69339200	Enhancers	NHDF-Ad	bronchial
12	chr7:69336600-69337800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:69336600-69338400	Enhancers	Ovary	ovary
14	chr7:69336800-69337800	Enhancers	Liver	Liver
15	chr7:69336800-69337800	Enhancers	K562	blood
16	chr7:69336800-69338400	Enhancers	Primary hematopoietic stem cells	blood
17	chr7:69336800-69339200	Enhancers	Fetal Thymus	thymus
18	chr7:69337000-69337800	Enhancers	GM12878-XiMat	blood
19	chr7:69337000-69338400	Enhancers	Brain Anterior Caudate	brain
20	chr7:69337000-69339200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:69337200-69337800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:69337200-69338200	Weak transcription	Osteobl	bone
23	chr7:69337200-69338600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:69337200-69338600	Weak transcription	Fetal Brain Male	brain
25	chr7:69337200-69339200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:69337400-69338400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:69337400-69338800	Weak transcription	Psoas Muscle	Psoas
28	chr7:69337400-69345000	Weak transcription	Fetal Brain Female	brain
29	chr7:69337400-69345200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:69337600-69338000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:69337600-69338000	Weak transcription	NHEK	skin
32	chr7:69337600-69338400	Weak transcription	HSMM	muscle
33	chr7:69337600-69338600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:69337600-69338600	Weak transcription	NH-A	brain
35	chr7:69337600-69338800	Enhancers	Primary B cells from peripheral blood	blood
36	chr7:69337600-69343200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:69337600-69345600	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:69337600-69354600	Weak transcription	Stomach Smooth Muscle	stomach

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