Variant report

Variant	rs17353815
Chromosome Location	chr7:69266221-69266222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:69265403..69267414-chr7:69267477..69269230,2	MCF-7	breast:
2	chr7:69260382..69262586-chr7:69265583..69267401,2	MCF-7	breast:
3	chr7:69250400..69252185-chr7:69263342..69266256,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1008379	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10085775	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1014382	0.89[ASN][1000 genomes]
rs1014417	0.81[EUR][1000 genomes]
rs10237145	0.94[ASN][1000 genomes]
rs10241485	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10259748	0.81[EUR][1000 genomes]
rs11765886	0.91[ASN][1000 genomes]
rs12698812	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698814	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698815	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12698820	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12698826	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13228464	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13232095	0.92[ASN][1000 genomes]
rs13236841	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17140933	0.81[EUR][1000 genomes]
rs17365011	0.83[ASN][1000 genomes]
rs17458097	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2058395	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs210598	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs210600	0.94[ASN][1000 genomes]
rs210603	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2159679	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2533432	0.89[ASN][1000 genomes]
rs2533434	0.88[ASN][1000 genomes]
rs2851488	0.89[ASN][1000 genomes]
rs2851504	0.80[ASN][1000 genomes]
rs2851517	0.89[ASN][1000 genomes]
rs2903097	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34221396	0.81[EUR][1000 genomes]
rs34249708	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35322474	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4717521	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs521259	0.94[ASN][1000 genomes]
rs55990156	0.81[EUR][1000 genomes]
rs563740	0.89[ASN][1000 genomes]
rs588004	0.89[ASN][1000 genomes]
rs60739014	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs608796	0.98[ASN][1000 genomes]
rs611052	0.89[ASN][1000 genomes]
rs611573	0.89[ASN][1000 genomes]
rs622767	0.98[ASN][1000 genomes]
rs624626	0.89[ASN][1000 genomes]
rs6460528	0.87[ASN][1000 genomes]
rs674865	0.89[ASN][1000 genomes]
rs6955815	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6957302	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6959766	0.98[ASN][1000 genomes]
rs6963101	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6963882	0.81[EUR][1000 genomes]
rs6974004	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6980307	0.81[EUR][1000 genomes]
rs763759	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7781403	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7793984	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7801117	0.83[CEU][hapmap]
rs7808773	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7809145	0.81[EUR][1000 genomes]
rs917616	0.89[ASN][1000 genomes]
rs9332399	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs9638575	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69249800-69269600	Weak transcription	Brain Angular Gyrus	brain
2	chr7:69253400-69278800	Weak transcription	Fetal Stomach	stomach
3	chr7:69255000-69276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:69259000-69269200	Weak transcription	Fetal Brain Male	brain
5	chr7:69262200-69268400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:69262600-69266800	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:69264400-69267200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:69264400-69267400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:69264400-69268200	Enhancers	Fetal Heart	heart
10	chr7:69264400-69268400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:69264400-69268400	Enhancers	Adipose Nuclei	Adipose
12	chr7:69264400-69268800	Enhancers	Fetal Intestine Small	intestine
13	chr7:69264600-69266800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:69264600-69268800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr7:69264800-69266400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:69265000-69267600	Enhancers	Placenta	Placenta
17	chr7:69265000-69270400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:69265200-69266600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:69265200-69267800	Enhancers	Ovary	ovary
20	chr7:69265200-69268400	Enhancers	Fetal Intestine Large	intestine
21	chr7:69265400-69267200	Enhancers	Rectal Smooth Muscle	rectum
22	chr7:69265600-69266600	Weak transcription	GM12878-XiMat	blood
23	chr7:69265600-69266800	Weak transcription	Fetal Thymus	thymus
24	chr7:69265600-69266800	Weak transcription	Right Ventricle	heart
25	chr7:69265600-69266800	Weak transcription	Small Intestine	intestine
26	chr7:69265800-69266800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:69265800-69266800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:69265800-69266800	Weak transcription	Left Ventricle	heart
29	chr7:69265800-69266800	Weak transcription	Psoas Muscle	Psoas
30	chr7:69265800-69266800	Weak transcription	Right Atrium	heart
31	chr7:69265800-69268800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:69265800-69269600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr7:69265800-69269600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:69265800-69273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:69265800-69273600	Weak transcription	HSMMtube	muscle
36	chr7:69265800-69282600	Weak transcription	Pancreas	Pancrea
37	chr7:69266000-69266600	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:69266000-69266800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:69266000-69266800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:69266000-69267000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr7:69266000-69268000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:69266000-69270000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:69266000-69270000	Weak transcription	Fetal Lung	lung
44	chr7:69266000-69270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:69266200-69266600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr7:69266200-69267200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr7:69266200-69267600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:69266200-69276600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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